Gene Information

Name : Sinme_6123 (Sinme_6123)
Accession : YP_004551749.1
Strain :
Genome accession: NC_015591
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 843404 - 844828 bp
Length : 1425 bp
Strand : -
Note : PFAM: Transposase, IS66; KEGG: rhi:NGR_b09780 putative insertion sequence transposase protein, IS66 family

DNA sequence :
ATGCTCGAGGACGCCGAGGCGACGGCCACCGAGGATGAGCTTGCGGCCGAAATGGCGATTGCCGCGGCCGCTCCGATTGC
TGTCGCCGGCTTCACCCGCAAGCGGCCCGTCAAGAAACCCTTTCCTGATCACCTGCCGCGCGAGCGGGTTGTCGTGCCGG
GTCCGGTCGCCTGCAGCTGCTGCGGCAGTGAGCGGTTGCGCAAACTCGGCGAAGACATCACCGAGACGATGGAAAGCGTT
CCGCGTTCCTGGAAAGTTATTCAGACGGTACGCGAAAAGTTCAGTTGCCGCGACTGTGAGAAGATCAGCCAGGCGCCGGC
CCCATTCCATGTCATCCCCAGGGGCTGGGCGGGCCCGAACCTTTTGGCGATGATCCTTTGCGACAAGTTCGGACAGCACA
TTCCCCTCAATCGCCAGGTCGAACGCTTTGCGTTGGAAGGTGTGCCGATCAGCCTGTCGACAGTGGCTGATGCGATCGGG
TCCTGTTGCCATGTCCTTGACCCGCTGCTGCGGCGGATCGAAGCCCATACATTTGCTGCCGAACGGGTCCATGGCGACGA
TACCACGGTTCCGGTACTGGCGGCCGGTAAGACCGACACGGGTCGGATCTGGACATATGTCCGGGACGATGCCCCATTTG
GCGGACCTGCACCTCCGTCGGCGATGTTCTACTATTCCCGGGACCGCGCCGGCGAACATCCACAAGGACATCTGGCCAAC
TACAGCGGTATCCTTCAGGCGGATGCCTATACCGGCTATACGCAGCTCTATCTTCCCGATCGAAGTCCGGGCCCGATTTA
TGAGGCAGCGTGCTGGGCACATGCAAGGCGGCCGTTCTTCGCGCTGGCCGACCTGGAAGCCAATGCACGTCGAAAAGCAC
AAGGCAAACGCGCCGCCGTCATCTCGCCTGTCGCTCTGAAGATGGTGCAACGGATCGATGCACTGTTCGAGATCGAACGC
CAGATCAACGGCCAGACTGCGGATGAGCGCAGAGCATCCCGTCAGCAGCTCAGCAAGCCGCTGATCGACGACATGGAAAT
CTGGATGCGCGAGCAACGTGCCAAGCTGTCTCGCGACAACGACCTGGCTAAAGCGTTCGATTATCTGCTGAACCGCTGGG
AATCCTTTACCCGGTTCCTCGACGATGGCCGCATCTGCTTGTCGAATAATTGTGCCGAGCGATCGTTGCGCGGCGTTGCC
TTGGGAAGAAAAGCCTGGCTGTTTGCCGGTTCCGACCGTGGTGGCCAGCGGGCCGCCGCCATGTACAGCTTGATCGTCAC
AGCCAAATTGAACCGTATTGATCCGCAGGCTTGGCTTGCCGACGTCCTGGCCCGGATCGCCGATCAACCGGCAAGCCGGA
TCGATGAACTCCTTCCCTGGCACTGGGCGAATATCGTGGCGGCGCCTCGGTTGCGGGCGGCATAA

Protein sequence :
MLEDAEATATEDELAAEMAIAAAAPIAVAGFTRKRPVKKPFPDHLPRERVVVPGPVACSCCGSERLRKLGEDITETMESV
PRSWKVIQTVREKFSCRDCEKISQAPAPFHVIPRGWAGPNLLAMILCDKFGQHIPLNRQVERFALEGVPISLSTVADAIG
SCCHVLDPLLRRIEAHTFAAERVHGDDTTVPVLAAGKTDTGRIWTYVRDDAPFGGPAPPSAMFYYSRDRAGEHPQGHLAN
YSGILQADAYTGYTQLYLPDRSPGPIYEAACWAHARRPFFALADLEANARRKAQGKRAAVISPVALKMVQRIDALFEIER
QINGQTADERRASRQQLSKPLIDDMEIWMREQRAKLSRDNDLAKAFDYLLNRWESFTRFLDDGRICLSNNCAERSLRGVA
LGRKAWLFAGSDRGGQRAAAMYSLIVTAKLNRIDPQAWLADVLARIADQPASRIDELLPWHWANIVAAPRLRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-76 48
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 7e-83 48
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 6e-85 46
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-85 46
unnamed AAL57570.1 unknown Not tested LEE Protein 8e-86 46
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 7e-86 45
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 1e-84 45
tnp AEA34686.1 transposase Not tested Not named Protein 2e-85 45
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 1e-84 45
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 1e-85 45
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 2e-85 45
unnamed AAC31494.1 L0015 Not tested LEE Protein 1e-85 45
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 2e-85 45
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 9e-86 45
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 7e-77 44
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 4e-77 44
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-75 44
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-75 44
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 5e-62 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_6123 YP_004551749.1 transposase IS66 VFG1700 Protein 2e-76 48
Sinme_6123 YP_004551749.1 transposase IS66 VFG0793 Protein 7e-86 45
Sinme_6123 YP_004551749.1 transposase IS66 VFG1513 Protein 3e-62 42
Sinme_6123 YP_004551749.1 transposase IS66 VFG1736 Protein 3e-57 42