|
Name : Sinme_5808 (Sinme_5808) Accession : YP_004551465.1 Strain : Genome accession: NC_015591 Putative virulence/resistance : Virulence Product : Ti-type conjugative transfer system protein TraG Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 512857 - 514776 bp Length : 1920 bp Strand : - Note : KEGG: ret:RHE_PD00167 conjugal transfer coupling protein TraG; TIGRFAM: Ti-type conjugative transfer system, TraG; PFAM: Ti-type conjugative transfer system, TraG-like DNA sequence : ATGGCACTGAAGGCAAAACCGCATCCGAGCCTGTTGGTCATTCTCTTCCCCGTCGCCGTCACCGCCGCTGCCGTCTATGT CGTCGGCTGGCGCTGGCCGGGGCTCGCCGCCGGCATGTCGGGGAAGACGGCATATTGGTTCCTGCGGGCGGCGCCCGTGC CAGCGCTACTGTTCGGGCCGCTCGCCGGCCTGTTGGCCGTTTGGGCCTTGCCATTGCACCGGCGAAGGCCAGTCGCAATG GCGAGCCTCGCCTGTTTTCTGACGGTCGCGGGCTTCTACGCGCTCCGTGAATTCGGCCGGCTGTCCCCCTCCGTGGAAAG CGGTGCGCTATCATGGGACCGGGCGCTGTCCTACCTCGACATGGTCGCTGTCGTCGGCGCGGTCCTTGGCTTTATGGCCG TCGCTGTCTCCGCGCGCATCTCCACCGTCGTGCCCGAACCGGTAAAGCGCGCTAAGCGCGGAACCTTCGGTGACGCGGAC TGGCTGCCGATGGCGGCGGCGGGAAAGCTGTTTCCGCCGGACGGCGAGATCGTCATCGGGGAGCGCTACCGCGTCGACAA GGACATTGTCCACGAACTGCCCTTCGATCCAAACGATCCGGCGACTTGGGGCCAAGGCGGCAAGGCCCCTTTGCTGACCT ACCGCCAGGACTTCGATTCCACCCATATGCTGTTCTTTGCGGGCTCGGGTGGATACAAGACGACCAGCAACGTCGTGCCG ACGGCCCTGCGTTATACCGGGCCGCTCATCTGCCTCGATCCGTCGACCGAGGTCGCGCCCATGGTGGTCGAGCACCGAAC CCGCGTGCTCGGCCGCGAGGTGATGGTGCTTGATCCGACGAACCCGATCATGGGCTTCAACGTGCTCGACGGGATCGAGC ACTCACGGCAAAAGGAAGAGGACATCGTCGGCATTGCCCACATGCTGCTGTCAGAAAGTGTGCGCTTCGAAAGCTCGACC GGCTCCTACTTCCAGAACCAGGCGCACAATCTCCTGACCGGCCTGCTCGCCCATGTGATGCTGTCGCCCGACTATGCCGG ACGGCGAACCTTACGCAGTCTCCGGCAGATCGTATCCGAGCCAGAGCCGTCGGTGCTGGCGATGCTGCGTGACATTCAGG AGCATTCCGCGTCCGCTTTCATCCGCGAAACGCTCGGCGTCTTCACCAATATGACCGAGCAGACTTTTTCGGGCGTCTAC TCTACGGCGTCGAAGGATACGCAGTGGCTGTCGCTCGACAGCTACGCCGCACTCGTTTGCGGCAACGCGTTCAAGTCGAG CGATATCGTCTCGGGCAAGAAGGACGTTTTCCTGAACATCCCCGCGTCGATCCTGCGCTCCTATCCGGGCATCGGCCGCG TCATCATCGGCTCGCTGATCAATGCCATGATCCAGGCCGATGGCTCATTCAAGCGCCGGGCGTTGTTCATGTTGGATGAG GTCGATCTCCTCGGCTACATGCGCCTCCTCGAGGAGGCACGCGACCGCGGCCGCAAGTACGGCATCAGCATGATGCTGCT GTACCAATCCCTAGGGCAGCTGGAGCGGCATTTCGGGAGGGACGGTGCGGTGTCGTGGATCGACGGATGCGCCTTCGCCT CCTATGCCGCGGTTAAGGCGCTGGACACGGCGCGCAACATTTCGGCGCAATGCGGAGAAATGACGGTCGAGGTAAAAGGA AGCTCCCGCAATATCGGCTGGGACACGAAGAACAGCGCATCGCGCAAATCGGAAAACGTCAATTACCAGCGCCGGCCGCT GATCATGCCGCACGAAATCACCCAGTCGATGCGAAAGGACGAACAGATCATCATCGTCCAGGGCCACAGCCCGATCCGCT GCGGGCGCGCGATCTACTTCCGGCGGAAGGACATGAACGAGGCGGCGAAGGCCAATCGCTTCGTCAAGGCTGTCCCTTGA Protein sequence : MALKAKPHPSLLVILFPVAVTAAAVYVVGWRWPGLAAGMSGKTAYWFLRAAPVPALLFGPLAGLLAVWALPLHRRRPVAM ASLACFLTVAGFYALREFGRLSPSVESGALSWDRALSYLDMVAVVGAVLGFMAVAVSARISTVVPEPVKRAKRGTFGDAD WLPMAAAGKLFPPDGEIVIGERYRVDKDIVHELPFDPNDPATWGQGGKAPLLTYRQDFDSTHMLFFAGSGGYKTTSNVVP TALRYTGPLICLDPSTEVAPMVVEHRTRVLGREVMVLDPTNPIMGFNVLDGIEHSRQKEEDIVGIAHMLLSESVRFESST GSYFQNQAHNLLTGLLAHVMLSPDYAGRRTLRSLRQIVSEPEPSVLAMLRDIQEHSASAFIRETLGVFTNMTEQTFSGVY STASKDTQWLSLDSYAALVCGNAFKSSDIVSGKKDVFLNIPASILRSYPGIGRVIIGSLINAMIQADGSFKRRALFMLDE VDLLGYMRLLEEARDRGRKYGISMMLLYQSLGQLERHFGRDGAVSWIDGCAFASYAAVKALDTARNISAQCGEMTVEVKG SSRNIGWDTKNSASRKSENVNYQRRPLIMPHEITQSMRKDEQIIIVQGHSPIRCGRAIYFRRKDMNEAAKANRFVKAVP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4 | YP_001610010.1 | conjugal transfer coupling protein TraG | Not tested | Not named | Protein | 2e-160 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sinme_5808 | YP_004551465.1 | Ti-type conjugative transfer system protein TraG | VFG2242 | Protein | 1e-167 | 55 |
