Gene Information

Name : Sinme_3081 (Sinme_3081)
Accession : YP_004550402.1
Strain :
Genome accession: NC_015590
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3141848 - 3142705 bp
Length : 858 bp
Strand : +
Note : PFAM: ABC-3; KEGG: smd:Smed_2916 ABC-3 protein

DNA sequence : 
ATGATCGCCACGCTCATCGAGCCGTTCGCCTATAGCTACATGGTGAATGCCATGTGGGTAAGCGCGCTGGTGGGCGCGGT
CTGCGCGTTTCTTTCGGCCTATCTCATGCTGAAGGGCTGGTCGCTGATCGGCGATGCGCTCTCCCACTCGATCGTGCCGG
GCGTCGCCGGGGCCTATATGCTCGGGCTTCCCTTCTCGCTCGGCGCCTTCTTTTCCGGTGCCCTTGCCGCCGGTGCCATG
CTGTTCCTCAACCAGCGCACGCGGCTGAAGGAGGACACGATCATCGGTTTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTCATGGTCTCTCTGTCGCCGACCTCGGTGAACATTCAGACGATCGTGCTCGGCAATATCCTCGCCATCACCCCGGCCG
ACACGTTGCAGCTCGCCATCATCGGCGTCGTCTCACTCATGATCCTGTCCGCCAAGTGGAAGGACCTGATGGTGACCTTC
TTCGACGAAAGCCACGCCCGCTCCATCGGCATCAACACCACCTTTCTGAAGGTGCTCTTCTTCACGCTGCTCTCGGCCTC
GACGGTGGCGGCGCTGCAGACGGTCGGCGCCTTCCTGGTCGTCGCCATGGTCGTCACCCCCGGCGCGACCGCCTATCTCC
TGACCGACCGTTTTCCGCGGCTGATCGTGATCAGCATCGCGATCGGGGCCCTGACGAGCTTCGCCGGCGCCTATGCGAGC
TACTTCCTCGACGGCGCAACCGGCGGCATCATCATCGTGCTGCAGACCGCGATCTTCCTGTTCGCCTTCGTACTTGCCCC
GAAACACGGGCTGCTCGCCGCCCGCCGCCGCGCATCCGAGGCTCTGGAGACCGCATGA

Protein sequence : 
MIATLIEPFAYSYMVNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGALAAGAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLAIIGVVSLMILSAKWKDLMVTF
FDESHARSIGINTTFLKVLFFTLLSASTVAALQTVGAFLVVAMVVTPGATAYLLTDRFPRLIVISIAIGALTSFAGAYAS
YFLDGATGGIIIVLQTAIFLFAFVLAPKHGLLAARRRASEALETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-80 79
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-80 79
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-80 79
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-80 79
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-80 79

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_3081 YP_004550402.1 ABC transporter BAC0351 Protein 1e-80 79
Sinme_3081 YP_004550402.1 ABC transporter BAC0441 Protein 3e-69 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_3081 YP_004550402.1 ABC transporter VFG0527 Protein 1e-80 79