Gene Information

Name : Sinme_2958 (Sinme_2958)
Accession : YP_004550279.1
Strain :
Genome accession: NC_015590
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 2991516 - 2993012 bp
Length : 1497 bp
Strand : +
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: smd:Smed_2800 lysyl-tRNA synthetase

DNA sequence : 
ATGACCGACAAGACACAGGCAGCCGGCCTCTCCTCCGACGCGACGGAAGTGCGCTCCCAGAAGCTCGACCTGCTGCGCCA
GCAGATCGGCGACGTCTATCCCGCGCATTTCCACCGTACGCTCACCAATGCGGAACTCGCGGAGAAATATGCCGGGCTGG
AGCCCGATACCGAAAGCGGCGAAACGGTAACCGTTGCCGGCCGCGTTTTCTCCTCGCGCAATTCCGGCATGTTCATGGAT
CTTCATGACGCCTCCGGCAAGATCCAGATCTTTTCGCACAAGGATACGGCACCGGAAGAGGCGCGCGCGCTTCTGCCGAT
GATCGATCTCGGCGACATCATCGGGGTCACCGGAGAGGTGCGCCGCACCAAGCGCGGCGAACTGACCGTCAACGCCAAAG
AGATCACCATGCTCTGCAAGTCGCTCCTGCCGATGCCGGAGAAGTATCACGGGCTTGCCGATATCGAGACGCGCTACCGC
AAGCGCTACCTCGACATCATGGTCAACGAGGAATCGAAGCTGCGCTTCCAGCAGCGAAGCCGCATCGTGTCGAGCCTGCG
CCGATTCCTCGAGGACGAAGGCTTCATGGAAGTGGAGACGCCGATGCTGCAGCCGATCTACGGCGGCGCGACGGCCGAGC
CCTTCAAGACGCATCACAACACGCTGAAGCTCGACATGTATCTGCGCATCGCGCCCGAGCTTTACCTGAAGCGCATTCTC
GTTTCCGGCCTGACGGACAAGGTCTTCGAGATCAACCGCAACTTCCGCAACGAAGGCGTCTCGACCCGGCACAATCCTGA
ATTCACCATGATGGAGTGCTACTGGGCCTATGCTGACTACGAGGACGTGATGGGTCTCGTGGAGCGCATGTTCGAGACCC
TGGCGCTTGCGGTTCACGGCAAGACGGAATTCGAGTTCGGCGACAAGCAGCTCTCCTTCAAGGGGCCGTTCCCGCGCGTC
TCTATGCCGGCGGCCGTCAAGGACGCGACCGGAATCGATTTCCTTGCCCTCAAGAGCGACGAGGAGGCCCGGCAGGCGGC
TCGCGACGCCGGTGTCGAGATCGAGAAGGACGCGACCTGGGGCGAAGTGCTCGCCTTCCTCTTCGAGGAGAAGGTCGAAG
CGACCTTGATCCAGCCTGCTCATGTCATCCACTTCCCGAAGGACATCTCGCCCTTCGCCAAGGAGGTGCCGGGCGAGCCG
CGGCTCGTCGAGCGCTTCGAGACCTATTGCAACGGCTGGGAGATCGGCAACGCCTTTTCCGAGCTCAACGACCCGGTCGA
GCAGCGCGCCCGCATGGTCGAGCAGATGGAACAGGCGCATGCCCGCGGCGAGAAGGAAAAGACGCTGGACGAGGACTTCC
TCGATGCCATGGACCAGGGCATGCCGCCCGCCGGGGGGTTGGGGATCGGTGTCGACCGGCTGATCATGCTGCTCACCAAC
TCGCCGTCGATCCGCGACATCATCCTCTTCCCGGCCCGCCGCCAGAAGGCCGATTGA

Protein sequence : 
MTDKTQAAGLSSDATEVRSQKLDLLRQQIGDVYPAHFHRTLTNAELAEKYAGLEPDTESGETVTVAGRVFSSRNSGMFMD
LHDASGKIQIFSHKDTAPEEARALLPMIDLGDIIGVTGEVRRTKRGELTVNAKEITMLCKSLLPMPEKYHGLADIETRYR
KRYLDIMVNEESKLRFQQRSRIVSSLRRFLEDEGFMEVETPMLQPIYGGATAEPFKTHHNTLKLDMYLRIAPELYLKRIL
VSGLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDVMGLVERMFETLALAVHGKTEFEFGDKQLSFKGPFPRV
SMPAAVKDATGIDFLALKSDEEARQAARDAGVEIEKDATWGEVLAFLFEEKVEATLIQPAHVIHFPKDISPFAKEVPGEP
RLVERFETYCNGWEIGNAFSELNDPVEQRARMVEQMEQAHARGEKEKTLDEDFLDAMDQGMPPAGGLGIGVDRLIMLLTN
SPSIRDIILFPARRQKAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 3e-103 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinme_2958 YP_004550279.1 lysyl-tRNA synthetase VFG1668 Protein 1e-103 47