Gene Information

Name : Desru_3867 (Desru_3867)
Accession : YP_004547353.1
Strain : Desulfotomaculum ruminis DSM 2154
Genome accession: NC_015589
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 3935464 - 3935943 bp
Length : 480 bp
Strand : -
Note : PFAM: protein of unknown function DUF163; KEGG: drm:Dred_3293 hypothetical protein

DNA sequence :
ATGAAAATTACCATTTTATCTGTTGGTAAACTAAAAGAGAAATACCTGGTGGACGGGGTAAAAGAATACAGTAAACGATT
GGGTCCCTATGCCAAATTGGAGATACTGGAAGTGCCGGATGAACCCTGTCCGGAAAATGCTCCCCGGGCTGTGGAAGATC
AGGTCCGGCAGAAAGAAGCGGATAAACTGGCCAAACGCCTTCGGGAAGGGACCTATCTCATTGTCCTGGATCCCAGAGGG
AAAATGCTCTCCTCCGAAGAAATGGCCGCCAGAATGGAGAAAAGTGCCTTATCCGGCCACAGCGACATTACTTTTATCAT
CGGCGGATCCCTGGGGCTGGCCGATTCCCTGAGAGAACGGGCCCATTTGCTGTTGTCCTTGTCCAATATGACCTTTCCCC
ACCAATTGGTGCGGCTTCTTTTAGTGGAGCAGATTTATCGCTGGTTTAAAATTATAAGGAATGAACCGTATCACAAATGA

Protein sequence :
MKITILSVGKLKEKYLVDGVKEYSKRLGPYAKLEILEVPDEPCPENAPRAVEDQVRQKEADKLAKRLREGTYLIVLDPRG
KMLSSEEMAARMEKSALSGHSDITFIIGGSLGLADSLRERAHLLLSLSNMTFPHQLVRLLLVEQIYRWFKIIRNEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-39 54
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-39 54
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 3e-38 51
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 5e-39 51
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 3e-38 51
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 3e-38 51
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 3e-38 51
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 3e-38 51
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-38 51
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 3e-38 51
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 3e-38 51
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-38 51
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 3e-38 51
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 3e-38 51
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 3e-38 51
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-38 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-34 50
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 7e-37 50