Gene Information

Name : Desru_3293 (Desru_3293)
Accession : YP_004546785.1
Strain : Desulfotomaculum ruminis DSM 2154
Genome accession: NC_015589
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3353420 - 3354106 bp
Length : 687 bp
Strand : +
Note : KEGG: dae:Dtox_2729 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
ATGAAACGCATCTTGATTATTGAGGATGATTTGGATATTGCCGAGCTGGAGCGGGACTATCTTCAGTTAAACGGCTTTAA
ATCGGAAATTGTTCAGGATGGACTTCAAGGTCTGAAAAAGGCTGTTTCGGGGTTATACGACGTGGTGGTGGTTGATTTGA
TGCTGCCCAATAAAGACGGCTATGAAATTATCCGGGAGGTTAGGAAAAAACTGGAGATTCCGGTCCTGGTGGTTTCGGCC
AAGGGCGAAGAGATTGATAAAATCAGGGGGTTGGATATCGGGGCGGACGACTATTTGACCAAACCTTTTAGTCCTGCGGA
ACTGGTGGCCAGAATCAAATCTCATATTCGGAGATATGAGCGCCTTAAGGGCCCTACCCTGGCTTCGGAGCTGCTACAGT
ACAAGGGATTGGAAATCAACACGGCATCTCACAAGGTCTTTGTGAATGACAAAGAGGTTCAACTGACAGCAAAAGAGTAC
GACTTGCTGGTCTTTTTAGCGGCAAATCCAAACATTGTTTTTACCAAAGAACACCTTTTTGATACCCTATGGGGCAGCGA
ATATTGCGGGGATACGGCTACGGTGGCGGTTCATATTCAAAAAATCCGTAAAAAAATTGAAAAGGACCCGGCCAACCCGG
AATTTATTGAAACCCTGTGGGGTACCGGCTACCGCTTTAATTCCTAG

Protein sequence : 
MKRILIIEDDLDIAELERDYLQLNGFKSEIVQDGLQGLKKAVSGLYDVVVVDLMLPNKDGYEIIREVRKKLEIPVLVVSA
KGEEIDKIRGLDIGADDYLTKPFSPAELVARIKSHIRRYERLKGPTLASELLQYKGLEINTASHKVFVNDKEVQLTAKEY
DLLVFLAANPNIVFTKEHLFDTLWGSEYCGDTATVAVHIQKIRKKIEKDPANPEFIETLWGTGYRFNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-36 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-35 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desru_3293 YP_004546785.1 response regulator receiver HE999704.1.gene2815. Protein 1e-37 43
Desru_3293 YP_004546785.1 response regulator receiver NC_012469.1.7685629. Protein 7e-33 43
Desru_3293 YP_004546785.1 response regulator receiver AM180355.1.gene1830. Protein 8e-36 42
Desru_3293 YP_004546785.1 response regulator receiver AE015929.1.gene1106. Protein 8e-27 41
Desru_3293 YP_004546785.1 response regulator receiver AF155139.2.orf0.gene Protein 2e-43 41
Desru_3293 YP_004546785.1 response regulator receiver AE000516.2.gene3505. Protein 6e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desru_3293 YP_004546785.1 response regulator receiver VFG1563 Protein 5e-36 47
Desru_3293 YP_004546785.1 response regulator receiver VFG1702 Protein 3e-35 46