Gene Information

Name : Desru_1853 (Desru_1853)
Accession : YP_004545400.1
Strain : Desulfotomaculum ruminis DSM 2154
Genome accession: NC_015589
Putative virulence/resistance : Virulence
Product : sigma-54 factor interaction domain-containing protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1868572 - 1869933 bp
Length : 1362 bp
Strand : -
Note : KEGG: drm:Dred_2001 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGAGCAATAAGATTTTAATTATTGATGATGAGGAGCATATGTGCTGGGCACTGGAAAAAGGCCTGCGTCAGGAAGGTTA
TCAAGTGCTGACAGCCACCCGGTCCAAGGAGGGGCTAGAAGTCATCCGCAATGAAGTTCCCTCTCTGGTAATCCTGGATT
TAAAAATGCCGGAAATGGACGGTCTGGAGGTTTTAACCGCAGCCAAGGACCTCTATCCCAAGCTTCCGGTCATTATGATT
ACAGCCCACGGCACCATCGACACCGCCATTGAAGCCATGAAGCACGGGGCCACCGATTACATCACCAAGCCTTTCGACCT
GGACGAGCTGAAAATGGTGGTGAAGCAGGCCTTAATGGTGAGCCATCTGCAAAGCGAAGTGACTTTTCTGCGTTTAGAAC
TGAATAAAAAATACGGCCAGATTGTCGGCAACAGCCAAGCCATTCAAGACGTATGCGCCTTGATTGAAAAGGTCGCGGAC
AGCAGCGCCACGGTCTTGATAACCGGCGAAAGCGGCACCGGCAAAGAAGTTACCGCTTTGTCCATTCACCAGTCCGGTTC
CCGGCGGGATAAGCCTTTTGTGCCCATTAATTGCGCCGCCCTGCCTGAATCATTACTGGAAAGTGAGTTGTTTGGCCATG
AAAAAGGTGCTTTTACCGGGGCGGTGGCCCGCAAACTGGGTCGCTTTGAGTTAGCCAATGAAGGAACTCTTTTTCTGGAC
GAGGTGACCGAGATGCCCCTGTCCATGCAAGTGAAACTCTTACGGGTTTTACAGGAGAGGACCTTTGAAAGGGTGGGCGG
CACCGGGAGCATTAAAGTGGATGTCCGGGTCATTGCCGCCACCAACCGCGACCCGGTGGATTGCATCAAAAGGGGAACCT
TTCGGGAGGATTTATATTATCGTTTAAATGTCCTGCCCATTCACCTTCCCCCCTTAAGGGAAAGGGTTGAAGATATTCCT
TTGCTGGTACTGCATTTTTTAAATAAATTTAATCCCAACCGGGAACCGCAAATTACTCCCGGCGCCATGGGTCTGCTGTG
TGCTTATGAGTGGCCCGGAAATATCCGCGAATTGCAAAATGTAATTGAACGGGCGGTCATCCTTTCCCAGGGCAATGAAA
TTAAAGAACATCATCTTTCCAAGGAAATTCAAAAAAGCGATGACCCGAAAAAAGAGGCTTCTTCTAAAGGACTGATCTTG
AATTTTCCTGATGAGGGCATTTCTTTTGAAGAAGTTGAAAAGGAACTGCTGTTAAAGGCCTTGGAAAAAAGCAATGGCAA
TCAAACCAAAGCTTCCAATTTGCTGGGCATCACCCGTTCCGCACTCCTTTATAGAGCCCAAAAATATAAAATTAAACTTT
AA

Protein sequence : 
MSNKILIIDDEEHMCWALEKGLRQEGYQVLTATRSKEGLEVIRNEVPSLVILDLKMPEMDGLEVLTAAKDLYPKLPVIMI
TAHGTIDTAIEAMKHGATDYITKPFDLDELKMVVKQALMVSHLQSEVTFLRLELNKKYGQIVGNSQAIQDVCALIEKVAD
SSATVLITGESGTGKEVTALSIHQSGSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANEGTLFLD
EVTEMPLSMQVKLLRVLQERTFERVGGTGSIKVDVRVIAATNRDPVDCIKRGTFREDLYYRLNVLPIHLPPLRERVEDIP
LLVLHFLNKFNPNREPQITPGAMGLLCAYEWPGNIRELQNVIERAVILSQGNEIKEHHLSKEIQKSDDPKKEASSKGLIL
NFPDEGISFEEVEKELLLKALEKSNGNQTKASNLLGITRSALLYRAQKYKIKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-58 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-58 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein BAC0467 Protein 2e-81 48
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein BAC0089 Protein 5e-81 46
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein BAC0022 Protein 5e-48 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein VFG1249 Protein 1e-70 45
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein VFG1214 Protein 6e-65 43
Desru_1853 YP_004545400.1 sigma-54 factor interaction domain-containing protein VFG0116 Protein 1e-65 43