Gene Information

Name : Thicy_0379 (Thicy_0379)
Accession : YP_004536633.1
Strain : Thioalkalimicrobium cyclicum ALM1
Genome accession: NC_015581
Putative virulence/resistance : Resistance
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 523051 - 523383 bp
Length : 333 bp
Strand : +
Note : PFAM: Small multidrug resistance protein; KEGG: gpb:HDN1F_14560 quaternary ammonium compound resistance protein

DNA sequence : 
TTGAATGTTTGGTTGCTATTAAGTTTGGCGATTGTGTCAGAGGTTATTGGTACGAGTGCCTTAAAAATGAGCGATGGATT
TACTAAATTTTGGCCTTCGATGGTTGTGGTCATTGGTTATGGTTTGGCGTTTTACTTGTTGTCGCTCACACTCAGACAGA
TTCCCGTAGGTGTGGCTTATGCCATTTGGGCGGGCGCCGGGATTGCTCTGATAACGCTGATTGGTTGGGTTGTATTTAAG
CAGTCTTTGGATTTAGCGGCGGTTTTAGGTATCGCACTCATTATTAGTGGTGTGGTGGTGCTACAGGTCTTTTCAAAAGT
GGGTGGACATTAG

Protein sequence : 
MNVWLLLSLAIVSEVIGTSALKMSDGFTKFWPSMVVVIGYGLAFYLLSLTLRQIPVGVAYAIWAGAGIALITLIGWVVFK
QSLDLAAVLGIALIISGVVVLQVFSKVGGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
qacEdelta1 AGK07074.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacE-delta1 AFG30112.1 QacE-delta1 Not tested PAGI-2 Protein 5e-20 59
qacEdelta1 CAJ77030.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 5e-20 59
qacEdelta1 YP_005797150.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 7e-20 59
qacEdelta1 AGK07100.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacEdelta1 AGF34989.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacEdelta1 CAJ77049.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 5e-20 59
ebr YP_006098377.1 putative ethidium bromide resistance protein Not tested Tn2411 Protein 7e-20 59
qacEdelta1 AGK07109.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacEdelta1 AGF35028.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacEdelta1 CAJ77052.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 5e-20 59
qacEdelta1 ACN81026.1 QacEdelta1 Not tested AbaR5 Protein 7e-20 59
qacEdelta1 AFV53123.1 QacEdelta1 multidrug exporter Not tested AbGRI2-1 Protein 5e-20 59
qacEdelta1 AGF35063.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacEdelta1 CAJ77088.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 5e-20 59
qacEdelta1 AGK36647.1 QacEdelta1 Not tested AbaR26 Protein 5e-20 59
qacEdelta1 AGK06933.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacE-deltal ACF06159.1 quartenary ammonium compound resistance protein Not tested Tn5036-like Protein 5e-20 59
qacEdelta1 AAK02047.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 5e-20 59
qacEdelta1 AGK06970.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacE-delta1 ACY75523.1 QacE-delta1 Not tested Tn6060 Protein 5e-20 59
qacEdelta1 AAK02056.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 5e-20 59
qacEdelta1 AGK06979.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacE-delta1 ACY75532.1 QacE-delta1 Not tested Tn6060 Protein 5e-20 59
qacEdelta1 ABB48428.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
ACICU_00227 YP_001844886.1 membrane transporter Not tested AbaR20 Protein 7e-20 59
qacEdelta1 AGK07016.1 QacEdelta1 Not tested SGI1 Protein 5e-20 59
qacE-delta1 AET25389.1 QacE-delta1 Not tested PAGI-2(C) Protein 5e-20 59
qacEdelta1 ABZ01839.1 QacEdelta1 Not tested SGI2 Protein 5e-20 59
qacEdelta1 YP_005797134.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 7e-20 59
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 3e-18 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0002 Protein 6e-27 63
Thicy_0379 YP_004536633.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 6e-27 63
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0322 Protein 2e-24 60
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0323 Protein 2e-20 59
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0324 Protein 4e-24 58
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0192 Protein 4e-19 55
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0139 Protein 4e-18 52
Thicy_0379 YP_004536633.1 small multidrug resistance protein CP001138.1.gene1489. Protein 4e-21 52
Thicy_0379 YP_004536633.1 small multidrug resistance protein NC_002695.1.913273.p Protein 9e-21 50
Thicy_0379 YP_004536633.1 small multidrug resistance protein CP004022.1.gene1549. Protein 1e-19 50
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0150 Protein 1e-20 49
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0377 Protein 1e-20 48
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0140 Protein 4e-18 47
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0327 Protein 3e-16 47
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0329 Protein 2e-15 46
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0325 Protein 1e-16 46
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0326 Protein 7e-15 44
Thicy_0379 YP_004536633.1 small multidrug resistance protein BAC0321 Protein 2e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thicy_0379 YP_004536633.1 small multidrug resistance protein VFG1586 Protein 1e-18 43