Gene Information

Name : Thicy_1277 (Thicy_1277)
Accession : YP_004537520.1
Strain : Thioalkalimicrobium cyclicum ALM1
Genome accession: NC_015581
Putative virulence/resistance : Virulence
Product : type I glutamine synthetase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0174
EC number : -
Position : 1454437 - 1455843 bp
Length : 1407 bp
Strand : +
Note : KEGG: tcx:Tcr_0536 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp

DNA sequence : 
ATGTCACAAGCAATTTTTGACTTAATCAAAGAACAAGAAATCAAATGGGCGGATCTGCGTTTCACCGACACCATTGGTAA
AGAACAACACGTTACTATTCCAGCGACTGAAGTTGATGATGAATTTTTTGAAGATGGCCACAGTTTTGATGGCTCTTCAA
TCCGTGGTTGGAAAGGTATTCAAAATTCAGATATGTTGCTAATGCCACAAACCGATGGATTTTACTCAGACCCATTCACC
AATGACCCAACCATCGTTATTCGCTGCATGATCGTTGAACCTTCAACGCTTGAACCTTATGAAAAAGATCCTCGTGGCAT
CGCTAAAAAAGCTGAGATGTACTTAAAATCAACTGGTGTAGCTGATTCAGCTTTCTTTGGTCCAGAACCAGAGTTCTTTA
TTTTTGACGATGTTCGCTGGGGTGCAGATATGTCCGGCTCTTTTGTTAAAATCGACAGTAACGAGTCGTCATGGAACACT
GAAAAAGTTTATGAGGGCGGCAACATGGGTCACCGTCCAAAAACAAAAGGCGGCTACTTCCCTGTGCCACCGGTTGATCA
ACTTCATGAAATTCGTGCGGATATTTGTGCGATGGCAGAAGCCATTGGCTTAAAAATTGAAGCACATCACCATGAAGTGG
CTAACAGTGGTCAGTGTGAGCTTGCTATCGCAGGTAACACCCTAACCGCGAAAGCTGACGAAGTGCAGATGCTGAAATAT
GCTGTGCACAATACCTGTCACCAACTAGGTAAAACAGCTACATTTATGGCTAAACCGATCGTGGGCGATAACGGTTCTGG
TATGCACATCAACCAATCATTATCAAAAGGTGGCAAAAACATTTTTGCTGGTGACGTCTACTCTGGTTTATCTCAAGAAG
CACTTTGGTATATCGGTGGTTTAATGAAGCATGCTCGTGCATTGAACGCATTCACTAACCCAGGCACCAATTCTTACAAG
CGTTTGGTTCCAGGTTTTGAGGCACCAATCCTATTGGCTTATTCAGGTTCTAACCGTTCTGCGTCAATCCGCATTCCTTA
TGCGGCATCTGAACGTGGTCGTCGTGTAGAATTACGTTTCCCAGATCCAACAGCTAACCCATATCTTGCTTTCGCAGCAT
CATTGATGGCTGGTCTTGATGGTATTACCAACAAGATCGATCCTGGCGCTCCTGCTGAGAAAGATTTGTATGATCTACCA
CCAGAAGAAGAAGCTACATTTAATACGGTCTGCGCCTCTTTAGAAGAAGCTTTAGATGCGTTAAATGAAGATCGTGAATT
CTTAAAAGCCGGTGGTGTATTCACTGATGAGGCAATTGACTCGTACATTAAACTTAAAATGGAAGATGTTACACGCATGC
GTGCAACAACTCACCCTATTGAATTTGACATGTATTACTCTTCTTAA

Protein sequence : 
MSQAIFDLIKEQEIKWADLRFTDTIGKEQHVTIPATEVDDEFFEDGHSFDGSSIRGWKGIQNSDMLLMPQTDGFYSDPFT
NDPTIVIRCMIVEPSTLEPYEKDPRGIAKKAEMYLKSTGVADSAFFGPEPEFFIFDDVRWGADMSGSFVKIDSNESSWNT
EKVYEGGNMGHRPKTKGGYFPVPPVDQLHEIRADICAMAEAIGLKIEAHHHEVANSGQCELAIAGNTLTAKADEVQMLKY
AVHNTCHQLGKTATFMAKPIVGDNGSGMHINQSLSKGGKNIFAGDVYSGLSQEALWYIGGLMKHARALNAFTNPGTNSYK
RLVPGFEAPILLAYSGSNRSASIRIPYAASERGRRVELRFPDPTANPYLAFAASLMAGLDGITNKIDPGAPAEKDLYDLP
PEEEATFNTVCASLEEALDALNEDREFLKAGGVFTDEAIDSYIKLKMEDVTRMRATTHPIEFDMYYSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
glnA YP_003728749.1 glutamine synthetase Not tested cag PAI Protein 2e-100 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thicy_1277 YP_004537520.1 type I glutamine synthetase VFG1399 Protein 8e-104 49