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Name : Thicy_1005 (Thicy_1005) Accession : YP_004537251.1 Strain : Thioalkalimicrobium cyclicum ALM1 Genome accession: NC_015581 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1152848 - 1154290 bp Length : 1443 bp Strand : - Note : TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; KEGG: tcx:Tcr_0251 type II secretion system protein E; SMART: ATPase, AAA+ type, core DNA sequence : ATGTTGTTGCCGTTCTTGTTTGCGCGCAAAAATCACGTGTTGTTAGAGCAACAGGCTCAGCAAGCCGTGCTGCGCGTGAC ACAAACAACACCCATGTCAGCGATTATCGAAGCGCAGCGCCTGCAAGAGGCACCTATTTCATTAAAGCAAGTGTCGGAGA CGGAATTTGAACGCCAGCTACAGCGCCTTTACGCCCAAGGGGCACAAGATGCAATGGGTGTGGCTGCTGATTTTGATGAT GATTTAGACTCACTGGTCGCGCAGGTTGATGAAACGCAGGACCTGCTCGACAACCAGGATGATGCACCAATTATAAAATT ACTTAATGCCGTGTTTTCTCAAGCAATTCGCGCCAACGCGTCTGATATTCATATCGAACCTTTTGAGACAGAGTTAAGAA TACGTTTTCGGATTGATGGACAACTTAAGACGATGCTTACGCCTAAATCAGGCTTAGCCGGGATGTTGGTGTCACGGATT AAGGTCATGGCCAAGCTCGATATTGCTGAGAAACGCTTGCCACAAGATGGGCGTATAGCCTTAAAACTGGGTGGGCGTGC AGTGGATTTACGGGTGTCAACAATCCCTTCAAATTACGGTGAGCGGGTGGTGATGCGTTTGTTGGATAAGTCAGCGGGAT TGTTAGAACTTGTTGACTTAGGTATGCCAAAACAGGTGCTATCGCACATTCGGCAATTGCTGGCGCGGCCACATGGTATT TTTTTGGTCACCGGTCCAACGGGATCAGGCAAAACCACCACTCTCTATGCTGGTTTGTCGCGTTTGAATGATAGCCATCG CAATATCATGACCATTGAAGATCCAGTTGAATACAACATAGCCGGTATTAGTCAAACGCAAGTTAACAGTAAAACCAACA TGACTTTTGCCAAAGGGTTACGGGCGATTTTGCGTCAAGATCCTGATGTGGTGATGATTGGTGAAATTCGTGATTTAGAA ACTGCTGAAATAGCGGTGCAATCCTCTCTAACTGGGCACCTGGTGCTATCGACTTTACATACCAATACCGCGGTCGGGGC AATGACGCGATTACGCGATATGGGTATAGAGCCGTTTTTATTAGCCTCAAGTCTAACGGGTGTGTTAGCGCAACGTCTGG TTCGTCGATTATGTACGCATTGTAAAGAGTTACATCACGCAGATCCCGCTGAATGTGCGTTGCTCGGGGTGGATAAGGCC GACATTTACCGCGCAAATGGTTGTGAACAATGTAATTACACCGGCTATCAAGGGCGTTTAGGTATTTATGAGTTGATTCT GATTGATGAACCTGTGCAACAGATGATTCATAGCGGAGCTTCGGAATTAGCCATTGAAAAATATGTTCGGCAGCACACTC CATCGTTGCAAAAAACCAGTTTCGAGCGAGTGCTTGCCGGTGAAACTAGTTTAGAAGAAGTGTTACGAGTGACGCAACAA TAG Protein sequence : MLLPFLFARKNHVLLEQQAQQAVLRVTQTTPMSAIIEAQRLQEAPISLKQVSETEFERQLQRLYAQGAQDAMGVAADFDD DLDSLVAQVDETQDLLDNQDDAPIIKLLNAVFSQAIRANASDIHIEPFETELRIRFRIDGQLKTMLTPKSGLAGMLVSRI KVMAKLDIAEKRLPQDGRIALKLGGRAVDLRVSTIPSNYGERVVMRLLDKSAGLLELVDLGMPKQVLSHIRQLLARPHGI FLVTGPTGSGKTTTLYAGLSRLNDSHRNIMTIEDPVEYNIAGISQTQVNSKTNMTFAKGLRAILRQDPDVVMIGEIRDLE TAEIAVQSSLTGHLVLSTLHTNTAVGAMTRLRDMGIEPFLLASSLTGVLAQRLVRRLCTHCKELHHADPAECALLGVDKA DIYRANGCEQCNYTGYQGRLGIYELILIDEPVQQMIHSGASELAIEKYVRQHTPSLQKTSFERVLAGETSLEEVLRVTQQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-135 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-136 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-136 | 58 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG0182 | Protein | 5e-131 | 58 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-132 | 57 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG1880 | Protein | 4e-85 | 47 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG0233 | Protein | 1e-83 | 47 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG2426 | Protein | 2e-72 | 46 |
| Thicy_1005 | YP_004537251.1 | general secretory pathway protein E | VFG0112 | Protein | 5e-83 | 42 |
