Gene Information

Name : PP1Y_AT3678 (PP1Y_AT3678)
Accession : YP_004533144.1
Strain : Novosphingobium sp. PP1Y
Genome accession: NC_015580
Putative virulence/resistance : Unknown
Product : putative capsid protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 377708 - 378799 bp
Length : 1092 bp
Strand : -
Note : KEGG: sml:Smlt0321

DNA sequence : 
ATGCGTAAAGAAACCCGCCAGCTCTTCAAATCCTACGTCAGCCAGATCGCGCTGCTGAACGGTATCGACGTCGAGGATGC
CGTCACCAAGTTCAGCGTATCGCCCGCCGTTGAGCAGACGCTGGAAGAGAAGATCCAGGAGTCGAGCGACTTCCTGAGCG
AGATCAACATCGTCGGCGTGCCGCAGCAGACCGGGCAGAAGGTCGGCGTCACCGTCACCCGCCCGATGGCAAGCCGCACC
GACACGGCAGGCGGCAACCGCCGCACCCCCACCGATCCGACCGACACCGGCGACAACGGCAGCTACTTCTGCCGCCAGAC
CAACTACGACCACGCGATCAAGTACGCAAAGCTCGATGCCTGGCGCCACAAGCCCCAGTTCCAGACCCTGCTGCGCGACG
TGATCCTGAAGCAGCAGGGCCGCGACCGGATCATGATCGGCTTCAACGGCACCTCGGCCGCCGCGTCGACCGACGTCGTC
GCCAATCCTCTGCTGCAGGACGTCAACGAGGGCTGGCTGCACAAGATCCGCACCCATGCAGGCTCGCGCGTGCTGAACGA
CGGTGACCTTTCGGTCGATCCAACCAAGGCGATCTATGTCGCGGCGGGCGTGGAAGTGGTCGATGGCGATGCCACCAACA
CTGCGAGCGCCGAAGCCGACTATGCCAACCTCGACGCGCTGGCCTTCGACGCGCTCGACCTGCTCGATCCCTGGCACCGC
AGCGATACCGACCTCGTCGTCATCGTTGGCTGGAAGCTGGTCAAGGACAAGTACCTGAACCTGCTGCAGGCCGCAGGCGA
AACCGCGACCGAGCGCGAGGCCGCGCATCGCATCCTCACGCTGCCAAAGCAGCTGGCGGGCAAGCGCGCCGTGATCGTGC
CCTTCTTCCCCGAAACCTCGATGCTGATCACCAGCCTCGATAACCTCTCGATCTATTGGCAGGAGGAAACCCGCCGCCGC
CAGATCAGGGACGAGCCCGCGCTCGACCAGATCGAGAACTACGAATCGGTGAACGAAGACTACGTCGTCGAAGACTACGG
CCGCACCGCCCTCGTCGAGAACGTGGTCATGGGCAAGAAGCCCGCCGCCTGA

Protein sequence : 
MRKETRQLFKSYVSQIALLNGIDVEDAVTKFSVSPAVEQTLEEKIQESSDFLSEINIVGVPQQTGQKVGVTVTRPMASRT
DTAGGNRRTPTDPTDTGDNGSYFCRQTNYDHAIKYAKLDAWRHKPQFQTLLRDVILKQQGRDRIMIGFNGTSAAASTDVV
ANPLLQDVNEGWLHKIRTHAGSRVLNDGDLSVDPTKAIYVAAGVEVVDGDATNTASAEADYANLDALAFDALDLLDPWHR
SDTDLVVIVGWKLVKDKYLNLLQAAGETATEREAAHRILTLPKQLAGKRAVIVPFFPETSMLITSLDNLSIYWQEETRRR
QIRDEPALDQIENYESVNEDYVVEDYGRTALVENVVMGKKPAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13466.1 predicted major capsid protein Not tested PAGI-6 Protein 3e-61 46
STY4625 NP_458707.1 putative major capsid protein Not tested SPI-7 Protein 1e-56 42
t4319 NP_807914.1 major capsid protein Not tested SPI-7 Protein 1e-56 42