Gene Information

Name : PP1Y_AT32909 (PP1Y_AT32909)
Accession : YP_004535842.1
Strain : Novosphingobium sp. PP1Y
Genome accession: NC_015580
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3448642 - 3449604 bp
Length : 963 bp
Strand : +
Note : KEGG: met:M446_2520

DNA sequence : 
ATGGATCTGGTCAAAGCGCGATTAGGCTGGGTCCAGCTGTATGCGCAAACGGGTGATGCCGGCCTCGTCTGTCGGCATTG
CGGCATTTCGCGTCCAACGCTGTGCAAATGGTGGCGACGGTATCAAGCAGCCGGCGTTGCCGGGCTGATCGAGGAGAGCC
GACGACCGAAGCGGTTCGCAGCCCAGAAGGTCTTTGCCGAGCAGGAGGTCCTGGTCCTCAGATTGCGCCGAGAACGCAAG
CTCGGGATCAAGCAGCTGCGCAACGAGCTCATTCGTCAGCATGATCTGACGCTTTCGCTCGATACCATTCACCGCGTGCT
TGTCCGCCACGACGAGCAGGTCCTCAAGCGACCGCGGCGAAGGGTGAAAGGGAAGATCCGCTACAGTCAGCCCATTCCCG
GCGACCGCGTGCAGATGGATGTCTACAAGATCGTGCCTGGCGTGTACCAGTACACCGCCATCGATGACTGCTCACGCTAC
AAGGTGCTGAGCGCTTTTCCTCGTCGTGCAACCGCCAATACGCTGATCTTTCTTGAACAGGTGATTGAGGAGATGCCCTT
CGCCATCCAGCGAATTCAAACTGACCGCGGGCTCGAGTTCTTCGCGCAAGCGGTTCAGCAGCGGCTGATCGATTGGGGCT
GCGAGTTCCGTCCGATCCGGCCGCGTTCGCCTCATCTCAACGGAAAGGTTGCACGTACCCGACGCGCCGATCTCGAGGAG
TTCTGGTGCACGGTAGATCCGAGGGAACCGGACATCGCTGATCGGCTTGCCGAGTGGCAACACCACTGGAATTGGTTCCG
CCCGCACACCGCGCTCAGCGGCGCATCTCCCATCGGCCGGGTAATAGAGTTGATGGAGAAAACGCCGCTTCGCGAGGAGG
TCGACGTCCGCTTCGAGCCCGCCGAAGAACGCATGCGACATCATGACGACCGCATCGACCAAGCTCTTTCTGCAATGAAA
TGA

Protein sequence : 
MDLVKARLGWVQLYAQTGDAGLVCRHCGISRPTLCKWWRRYQAAGVAGLIEESRRPKRFAAQKVFAEQEVLVLRLRRERK
LGIKQLRNELIRQHDLTLSLDTIHRVLVRHDEQVLKRPRRRVKGKIRYSQPIPGDRVQMDVYKIVPGVYQYTAIDDCSRY
KVLSAFPRRATANTLIFLEQVIEEMPFAIQRIQTDRGLEFFAQAVQQRLIDWGCEFRPIRPRSPHLNGKVARTRRADLEE
FWCTVDPREPDIADRLAEWQHHWNWFRPHTALSGASPIGRVIELMEKTPLREEVDVRFEPAEERMRHHDDRIDQALSAMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC12272.1 putative transposase Not tested VPI Protein 5e-71 51
unnamed AAK20746.1 putative transposase Not tested VPI Protein 5e-71 51
unnamed AAK20775.1 putative transposase Not tested VPI Protein 5e-71 51
VC0395_A0341 YP_001216297.1 transposase Not tested VPI-1 Protein 5e-71 51
VC0817 NP_230466.1 transposase Not tested VPI-1 Protein 5e-71 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP1Y_AT32909 YP_004535842.1 integrase catalytic subunit VFG0081 Protein 2e-71 51