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Name : PP1Y_AT2851 (PP1Y_AT2851) Accession : YP_004533071.1 Strain : Novosphingobium sp. PP1Y Genome accession: NC_015580 Putative virulence/resistance : Unknown Product : putative type I restriction-modification system HsdR Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 299874 - 303014 bp Length : 3141 bp Strand : + Note : KEGG: rle:pRL110101 DNA sequence : ATGACCAAATTCTCCGAAGATATCGTCGAACTAGCCAGCATCGAGATCCTGCAGGATCTCGGCTGGAACTATCTGCATGG CTCGGTCATCGCGCCGGATGGTGTGGCGGCTGAACGCCAAGCCTTTTCCGATGTCATCCTGCTACCGCGCCTGGAGAAGG CAGTGGCCGATCTCAACCCCACGCTGCCTGAAGCGGCACGGGCAGAGGCGATCCGTCGGCTGCTCACGAGTGAGACTGGC TCACTGGTCGAGGAAAACCGCCGCATACACCGACTGCTGACCGATGGCGTCCCTGTGGAATACCGCAATACGGATGGCCG CATTGTCGGCGACAAGGTCTGGCTACTCGATCTCGACAAAGTCGAGTCCAACGACTGGTTGGTAGTCAACCAGTTTACCG TCGTGGAAGGCAGTCAGAATCGGCGCCCTGACGTGATCCTGTTCGTCAACGGCTTACCATTGGCAGTGCTTGAACTGAAA AACGCCGCAGCAGAAAACGCCACAATTTCTGACGCGTTCCATCAGCTGCAGACGTATCTTGCTCAAATTCCCAGCCTGTT TCGCACCAACGCAGTGCTGATCACCTCGGACGGGATCGAAGCACGGATTGGCTCACTGGCAGCTGACCAAGAACGCTTCA TGCCCTGGCGCACGGTAACTGGCGAGGATTTCGCCCATCGCGGTCAACCGGAACTGGAGACCCTGCTGCGCGGCGTATTC ACGCGTGCAAATATCCTTGCCCTGATCCGAGATTTCATTGTTTTCGGCGATGCGGGCGCGGGGCCGTTCAAGATCATTGC CGGCTATCACCAGTTCCATGGTGCGCGAAAAGCTATCCGCGAAGCTGTCGATGCGAGCAGCCCCTTGGGTGACCGAAAGA TCGGCGTCATCTGGCACACGCAGGGATCGGGAAAGAGCTTCCTGATGGCGTTCTTCGCCGGGTTGGCGGTTAAGTCGCCG GAGCTTTCGAACCCGACGATCGTCGTGCTGACCGACCGCAACGACCTGGACGACCAGCTCGCCTCTACATTCAGCCTCTG CAAGGACCTTCTCCGCCAAAACCCCGAGCAGGCCGAGAGCCGCGAAGATCTGCAGCGTCTGCTGGCGCGGGCCTCTGGCG GGGTCATCTTCACGACGATCCAGAAGTTCTCGCCCGAACGCGGGGAAGAGAGCTTCCCGATGCTGACCGACCGCCGCAAC GTGATCGTCATGGCCGACGAGGCCCACCGCAGCCAGTACGGCTTCGACGCCAAGCTGGACGTCAAGACGGGCGCACGGCG TTACGGCTATGCCCACTACATCCGCCAGGCGATGCCGAACGCCTCGTTCATCGGCTTTACCGGCACGCCTATTGAGGCAG CGGATGTCAACACGCCCGCCATCTTCGGCAGGTACATAGACATCTACGATATCAGCCGTGCGGTCGAAGATGGCGCGACG GTCCCGATCTACTATGAGAGCCGTCTTGCCCGCATTGAACTGGACGAGGACGAGAAGCCACTGATCGACGCCGAGATCGA AGCTCTGGTCGAGGATGACACCCTGACCGAAGCGGAAAAGGCCAAGGCCAAATGGTCAACGGTCGAGGCCCTGGTAGGCT CGGACAAGCGCCTCAAACAGATCGCCGCCGACATGGTGACCCACCTTGAGGCGCGCACCGACGGCACCGAATACAAGGGC ATGGCCGTCTGCATGAGCCGGCGGATCTGCGTCGCCCTCTACAACGAGATCATCGCCCTTCGCCCGGACTGGCATTCCGA TGACGATGCGGATGGCGTGATCAAGATTGTCATGACGGGTGCGGCGTCTGATCCGCTCTCCTGGCAGCAGCACATCGGCA ACAAGCGCAGGCGCGACGGCCTGGCCAAACGTGCCCGTGACCCGAAAGACCCGCTGCGGCTGGTGCTGGTGCGCGACATG TGGCTGACCGGCTTTGACGCGCCGTGCATGAACACGATGTATGTCGACAAGCCGATGCGGGGCCATGGCCTGATGCAGGC GATCGCGCGTGTGAACCGGGTGTTTCGTGACAAGCCCGGCGGGCTGATCGTCGACTACATTGGCATCGCGCAGAACCTGA AGAAGGCGCTCAGCGACTATACCGACTCCGATCAGGAGAAGACCGGTATCGATGAGGCTGATGCCGTCGCCGCCCTGCTG GAGCGATACGAGATCGTCAGCGGCATCTTCCATGGCTTCGATTACCTGCCAGGCATCCACGGCGCACCGATGGAGCGCCT GCAGTGCCTCGCCGGCGCCATCGACTGGGTGCTCAAGTGGGCTGAAATCGAGGCGGGCAAGGCCCAGTCACCGGAGGACA AGAAGAAGGCTCATCGCCGCTATCTCGATCTCGTGCTGGAGCTGACCAAGGCCTATGCTCTCGCTTCGGCCAGTGACGAG GCCCGAGAAATCCGAGACGAGATAGGGTTCTTTCAAGCTGTCCGTGCTGCGATCGCCAAAAGCACGGCCACCGGCAAACT TAGCCAGGCGGATAAGACGTTCGCTGTCCAGCAGCTCATTGACCGCGCCGTCGCTTCGGCGGAAATTGTCGATATCCTTA AAGTTGCAGGCATCGACTCCCCAGACATCTCCATTCTGTCCGAAGAGTTCCTGCTGGAAATCCAGGGCATGGAGAAAAAG AACCTCGCCTTGGAAGCGCTCAAGAAGCTGTTGGCCGGAGAAATTACCAGCCGCATGCGGACCAACGTCGTTGAGAGCCG CGCTTTCTCCAGACGGCTTGAGGATGCTGTGGCCCGCTACCATGCGGGTGCTTTGTCGGCAGCTGAGATGATCAATGAGT TGATCGCGTTAGCCAAGGACATGAAAGCTGCGCAGCGACGCGGCGAGGACCAGGGTCTCTCACCTGAAGAAATTGCCTTC TATGACGCGCTTGCCGAGAACGAGAGTGCTGTCGAAGCTATGGGTAGCGAACAGCTACGCCTGATTGCTCATGAGCTGCT GGAACAGCTCCGACAAAACGTGACAGTCGACTGGCACCATAGGGAAAGTGCACGTGCCCGAATGCGGGTTCTAGTGAAGC GCATTCTCAAACGGTATGGTTACCCGCCCGATCTTGCTGACGAGGCAGTGCAGACTGTGCTTGCCCAAGCAGAAGTACTT CTCAAAGAGGTTTCACAATAA Protein sequence : MTKFSEDIVELASIEILQDLGWNYLHGSVIAPDGVAAERQAFSDVILLPRLEKAVADLNPTLPEAARAEAIRRLLTSETG SLVEENRRIHRLLTDGVPVEYRNTDGRIVGDKVWLLDLDKVESNDWLVVNQFTVVEGSQNRRPDVILFVNGLPLAVLELK NAAAENATISDAFHQLQTYLAQIPSLFRTNAVLITSDGIEARIGSLAADQERFMPWRTVTGEDFAHRGQPELETLLRGVF TRANILALIRDFIVFGDAGAGPFKIIAGYHQFHGARKAIREAVDASSPLGDRKIGVIWHTQGSGKSFLMAFFAGLAVKSP ELSNPTIVVLTDRNDLDDQLASTFSLCKDLLRQNPEQAESREDLQRLLARASGGVIFTTIQKFSPERGEESFPMLTDRRN VIVMADEAHRSQYGFDAKLDVKTGARRYGYAHYIRQAMPNASFIGFTGTPIEAADVNTPAIFGRYIDIYDISRAVEDGAT VPIYYESRLARIELDEDEKPLIDAEIEALVEDDTLTEAEKAKAKWSTVEALVGSDKRLKQIAADMVTHLEARTDGTEYKG MAVCMSRRICVALYNEIIALRPDWHSDDDADGVIKIVMTGAASDPLSWQQHIGNKRRRDGLAKRARDPKDPLRLVLVRDM WLTGFDAPCMNTMYVDKPMRGHGLMQAIARVNRVFRDKPGGLIVDYIGIAQNLKKALSDYTDSDQEKTGIDEADAVAALL ERYEIVSGIFHGFDYLPGIHGAPMERLQCLAGAIDWVLKWAEIEAGKAQSPEDKKKAHRRYLDLVLELTKAYALASASDE AREIRDEIGFFQAVRAAIAKSTATGKLSQADKTFAVQQLIDRAVASAEIVDILKVAGIDSPDISILSEEFLLEIQGMEKK NLALEALKKLLAGEITSRMRTNVVESRAFSRRLEDAVARYHAGALSAAEMINELIALAKDMKAAQRRGEDQGLSPEEIAF YDALAENESAVEAMGSEQLRLIAHELLEQLRQNVTVDWHHRESARARMRVLVKRILKRYGYPPDLADEAVQTVLAQAEVL LKEVSQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 50 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
