Gene Information

Name : PP1Y_AT25938 (PP1Y_AT25938)
Accession : YP_004535197.1
Strain : Novosphingobium sp. PP1Y
Genome accession: NC_015580
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2722687 - 2723862 bp
Length : 1176 bp
Strand : -
Note : KEGG: gbe:GbCGDNIH1_1508

DNA sequence :
ATGGGCAAGCTGACGGCGACCGCTGTTAAGGCCGCAACGAATCCGGGCCGGTATAGCGATGGCGATGGATTATTCCTCTT
GGTTGGGCCAACGGGGGCCAGGTCGTGGATTGTCCGCGTCCAAAAAGACAAGAAACGCCGTGACTTTGGCTTGGGCAGCG
CCGCCAAGGTTCCGCTCGCATTGGCAAGGGAACGGGCGCGCACCGTCCGCTCGCAGATCGAGGCGGGAATTGATCCCATA
TCAGAGCGCAGAAAAGCGGCAGGCATTCCTACGTTTCGGGAAGCGGCGGCAAGCGTCCATGCCGAGCACAAGGGAGGGTG
GAAGAACGACAAGCACCGCAAGCAATGGCTCGCCACGCTGGAGGCCTATGTCTTCCCGGCATTCGGTGACGTATCTGTGG
GAACGGTGGATGCCCCTGCCGTCCGCGATGTCTTAGCCGCGATATGGTTGACGAAACCGGAAACAGCGCGGCGGCTGCGA
CAACGCATTGTCACCGTCATCGACTGGGCGGTTGCCAAGGGTTACCGGGACGGGCCGCTCGCCATGGCGGTAATCGACAA
GGCACTTCCGAAACAGCGCGCAAAGGTCAAGCACCACACGGCACTGCCCTACGCCGATCTTCCTGCATTCATGATGACGC
TGCGCGAGAGCGAGAGCATGGGGCGGCTGGCGTTAGAGGCGGTAATCTTGACGGCGGCGCGCTCAGGCGAAGTCCGCATG
ATGGAGTGGGCCGAACTGGATCTAGACGCGGGACTGTGGACCGTACCAGCCGAGCGCATGAAGGCAGGCCGCGAGCACGT
CGTCCCGCTTCCCTCGCAGGCTGTGGCGTTCTTCGAACGCATGAAGGCGCACAAGCGCGGTGACAGCGATCTAGTCTTTC
CGGGCAACAAGCGCGGCAAGCCCCTGTCTGATATGACACTGACAAAGGCGCTGCGCGATATGGAAGTCGATGCCGTCCCG
CACGGCTTCCGCTCAACCTTCCGTGATTGGGTGGCCGAGCAAACGCACTGGCCCGCCGAACTGGCCGAGGCGGCACTGGC
GCACGTTATCAGCGACAAGACTGTTGCCGCCTATCAACGCGGCTCCATGCTGGAAAAGCGCCGTGAACTCATGGCAGCAT
GGGCGAATTACTGTGAGGGGGCGAACAACGGCAACGTCGTGCGGTTGGCGCGATGA

Protein sequence :
MGKLTATAVKAATNPGRYSDGDGLFLLVGPTGARSWIVRVQKDKKRRDFGLGSAAKVPLALARERARTVRSQIEAGIDPI
SERRKAAGIPTFREAAASVHAEHKGGWKNDKHRKQWLATLEAYVFPAFGDVSVGTVDAPAVRDVLAAIWLTKPETARRLR
QRIVTVIDWAVAKGYRDGPLAMAVIDKALPKQRAKVKHHTALPYADLPAFMMTLRESESMGRLALEAVILTAARSGEVRM
MEWAELDLDAGLWTVPAERMKAGREHVVPLPSQAVAFFERMKAHKRGDSDLVFPGNKRGKPLSDMTLTKALRDMEVDAVP
HGFRSTFRDWVAEQTHWPAELAEAALAHVISDKTVAAYQRGSMLEKRRELMAAWANYCEGANNGNVVRLAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1120 NP_286655.1 P4 family integrase Not tested TAI Protein 1e-61 42
Z1559 NP_287063.1 P4 family integrase Not tested TAI Protein 1e-61 42
int AAL08426.1 integrase Not tested SRL Protein 3e-61 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP1Y_AT25938 YP_004535197.1 transposase VFG0672 Protein 1e-61 42