Gene Information

Name : PP1Y_AT15728 (PP1Y_AT15728)
Accession : YP_004534273.1
Strain : Novosphingobium sp. PP1Y
Genome accession: NC_015580
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.99.3
Position : 1660918 - 1662417 bp
Length : 1500 bp
Strand : +
Note : KEGG: nar:Saro_3848

DNA sequence :
ATGGCTACCCAACTGAAGAGCGCGGAAAACGAATACGGCATCAAGCCCGAATACGGACACTTCATCGGCGGTGAATGGGT
TTCGGGCGACAGCGGCAAGACGATCGACCTGATCAACCCGGCGACCGGGGCGGTACTCACCAAGATCCAGGCCGGCAACG
CCAAGGACATCCAGCGCGCGGTCGCGGCGGCCAAGGCCGCCTTCCCGAAGTGGTCGGAAAGCTCTGCCGCCCAGCGTCAG
GAAATCCTGATCGAGGTCGCCCGCCGGCTCAAGGCGCGCCACCAGCACTACGCCACGCTCGAAACCCTGAACAACGGCAA
GCCGATCCGCGAATCGATGTACTTCGACATGCCGCAGGCGATCGGCCAGTTCGAAGTGTTCGCCGGCGCGGCCTATGGCC
TGCATGGCCAGACGCTGGACTATCCCGACGCGATCGGCATCGTCCACCGCGAGCCGCTGGGCGTCTGTGCGCAGATCATC
CCGTGGAACGTCCCGATCCTGATGATGGCCTGCAAGATCGCCCCGGCCCTGGCTTCGGGCAACACGGTCGTGCTCAAGCC
CGCGGAAACCGTGTGCCTGTCGGTAATCGAATTCTTTGTCGAAATGGCCGATCTGCTGCCCCCGGGCGTGATCAACGTGG
TGACCGGCTACGGCGCCGACGTCGGTGAAGCGCTGGTGACCCACGAAGACGTCCGCAAGGTTGCGTTCACCGGCTCGGTG
GCGACGGCTCGCCGGATCATCCAGTATGCTTCGTCGAACATCATTCCCCAGACGCTCGAACTGGGCGGCAAGTCGGCGCA
CATCGTCTGCGCCGATGCCGACATCGATGCAGCCGTCGAAAGCGCCACGATGTCGACCGTGCTCAACAAGGGCGAAGTCT
GCCTGGCCGGTTCGCGCCTGTTCCTGCACGAAGCGATCCAGGACGAATTCCTTGCCAAGTTCAAGGTGGCGCTCGAAGGC
ATCCGCCAGGGCGATCCGCTTGACTTTGCCACCCAGATTGGTGCGCAGGCCTCGCAGATGCAGATGGACAAGGTCCAGAG
CTACCTTCAGCTGGCCACCGACGAAGGTGCGACCGTGCTCACCGGCGGCAGCCGCAACGAAAGCCTGGCCGACGGCCATT
TCATCAGGCCGACGGTATTCACCAACGTCAACAATTCGATGCGTATCGCCCGCGAGGAAATCTTCGGCCCGGTCACCAGC
GTGCTGACCTGGAACGACGAGGACGCCATGATGGCGCTGGCCAACGACACGACCTATGGCCTGGCCGGCGGCGTCTGGAC
CAAGGACATCGCCCGCGCACACCGGATTGCCCGCAAGCTCGAAACCGGGACGGTTTGGGTCAACCGTTACTACAACCTCA
AGCCCAACATGCCGCTGGGCGGCTACAAGCAAAGCGGTTTCGGCCGTGAATTCAGCCATGAAGTCCTGCACCACTACACG
CAGACCAAGTCGGTTGTGATCAACCTGCAGGAAGGGCGAATGGGGATGTTCGACCAGTAA

Protein sequence :
MATQLKSAENEYGIKPEYGHFIGGEWVSGDSGKTIDLINPATGAVLTKIQAGNAKDIQRAVAAAKAAFPKWSESSAAQRQ
EILIEVARRLKARHQHYATLETLNNGKPIRESMYFDMPQAIGQFEVFAGAAYGLHGQTLDYPDAIGIVHREPLGVCAQII
PWNVPILMMACKIAPALASGNTVVLKPAETVCLSVIEFFVEMADLLPPGVINVVTGYGADVGEALVTHEDVRKVAFTGSV
ATARRIIQYASSNIIPQTLELGGKSAHIVCADADIDAAVESATMSTVLNKGEVCLAGSRLFLHEAIQDEFLAKFKVALEG
IRQGDPLDFATQIGAQASQMQMDKVQSYLQLATDEGATVLTGGSRNESLADGHFIRPTVFTNVNNSMRIAREEIFGPVTS
VLTWNDEDAMMALANDTTYGLAGGVWTKDIARAHRIARKLETGTVWVNRYYNLKPNMPLGGYKQSGFGREFSHEVLHHYT
QTKSVVINLQEGRMGMFDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 6e-79 42
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 4e-84 42
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 4e-84 42
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 4e-84 42
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-83 42
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 3e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP1Y_AT15728 YP_004534273.1 aldehyde dehydrogenase VFG0082 Protein 3e-79 42