Gene Information

Name : PP1Y_Lpl745 (PP1Y_Lpl745)
Accession : YP_004532664.1
Strain :
Genome accession: NC_015579
Putative virulence/resistance : Virulence
Product : capsular polysaccharide transport system ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 64467 - 65138 bp
Length : 672 bp
Strand : -
Note : assigned by KAAS to KEGG Orthology:K09689 capsular polysaccharide transport system ATP-binding protein

DNA sequence : 
ATGATCAACGTCGATCATGTCCACAAGGTCTATCCGACCCGCCAGGGCGACCGGGTCGTCCTGGACGATATCTCGTTTCG
CCTTGATCGCGGAGAGAAGCTGGGGATTCTGGGCCGTAACGGCGCCGGCAAATCGACATTGATCCGTCTAGTCAGCGGGG
CCGAACGGGCGACCTCGGGGGAAATCACCCGCACAATGTCAGTGTCCTGGCCGCTGGCATTCGGGGGCGCGTTTCAGAAT
GCGCTGACCGGGCTGGATAATGTCCGCTTCATCAGCCGCATCTACAACCAGGACTATCGGCAAAATATCGATTTTGTCTC
CGAGTTCACTGAACTTGGAATCTATCTGCGCGAACCTCTACGATCCTATTCGCAGGGCATGCGCGCACGGCTCGCTTTCG
CCATTTCCATGATCATCGAATTCGACTGCTACCTGATCGACGAAATTAGCGCGGTCGGAGATGCAAAATTTCACGAAAAG
TGCGCCTTTGAACTGTTCCACAAACGTGGGGACCGCGCCATGCTGATCATCTCACACGACACCGAATATGTACGCAATCA
TTGTGGGAAGTTTGCTGTTTTGAACGAGGGAAAGCTAGCTTTTTACCCCAATTTTGATCAGGCACTTGAAGCACATAATC
ATAACCTTCACCTAAGCGCTAAAGTTCGTTAA

Protein sequence : 
MINVDHVHKVYPTRQGDRVVLDDISFRLDRGEKLGILGRNGAGKSTLIRLVSGAERATSGEITRTMSVSWPLAFGGAFQN
ALTGLDNVRFISRIYNQDYRQNIDFVSEFTELGIYLREPLRSYSQGMRARLAFAISMIIEFDCYLIDEISAVGDAKFHEK
CAFELFHKRGDRAMLIISHDTEYVRNHCGKFAVLNEGKLAFYPNFDQALEAHNHNLHLSAKVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 4e-60 60
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP1Y_Lpl745 YP_004532664.1 capsular polysaccharide transport system ATP-binding protein VFG0258 Protein 1e-60 60
PP1Y_Lpl745 YP_004532664.1 capsular polysaccharide transport system ATP-binding protein VFG2563 Protein 3e-62 59
PP1Y_Lpl745 YP_004532664.1 capsular polysaccharide transport system ATP-binding protein VFG0696 Protein 2e-57 56
PP1Y_Lpl745 YP_004532664.1 capsular polysaccharide transport system ATP-binding protein VFG1449 Protein 6e-43 41