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Name : TREPR_0345 (TREPR_0345) Accession : YP_004532535.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Virulence Product : VI polysaccharide biosynthesis protein VipA/tviB Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : 1.1.1.- Position : 3998217 - 3999482 bp Length : 1266 bp Strand : - Note : identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 DNA sequence : ATGGAAAACATAAAGGTTGCTGTACTTGGCCTTGGTTATGTTGGTCTCCCATTGGCACGGTTGTTTTCAACTAAATATCC AACAGTTGGTTTTGATATAAATAGTGAACGGGTGAAAGCTTTATTAACAGGCCATGATACAACCTTAGAAATTACAGACG AATTATTACAATCCGCTTTACGTGATGGGTTTATATGTACCTCCACCATAGATGATATAAGGGAATGTAACTTTTATATT GTGGCAGTTCCAACGCCTGTCGACAAGAATAATAACCCTGATTTAACGCCGCTTTATAAAGCCAGTGAAGTCGTAGGCGC AGTTATTTCAAACGGAGATATTGTTGTCTATGAATCGACGGTTTATCCGGGAGTTACAGAAGAAGAATGTATCCCTATCG TTGAAAGAATTTCGGGATTACGATTTAATCAAGACTTTTTTGCAGGATATTCTCCTGAACGAATAAACCCCGGCGATAAA TTGCATACGGTTGAAAAAATCAAAAAGATTACATCAGGATCAACTTATGAATCGGGTAAAAAGATAAATGAAGTTTATGC ATCTGTAATTGAAGCGGGAACCCATTTGGCGCCTTCAATTAAAGTCGCTGAAGCGGCTAAGGTAATAGAAAATGCTCAAC GGGATATTAATATAGCCTTTGTAAATGAATTATCAAAAATATTTAATTTAATGGAAATAGATACCCATGATGTATTAGAG GCTGCCGGTACTAAGTGGAATTTTTTATCTTTTAAGCCTGGATTAGTTGGCGGGCATTGTATCGGCGTTGATCCATATTA TTTAGCGCAGTGTGCGCAAAATTATGGGTACCACCCGGAAATTATTCTTGCAGGACGTAGAACAAATGATGGTATGGGAG AATATGTCGCCAATCAGGTAATAAAGTTAATGATAAAAAAGCAGTTAAATGTATTAAATTCTAATATTTTAATATTGGGT TTTACTTTTAAAGAAAATTGCCCTGATGTACGTAATACAAGGGTAATAGATATTTATAATGTCTTTAAAGAATATAATAT CAATACTACAATATATGAACCATTAGCTGACAAAGCGATAGTTAAACATGAATATAATATTGATATAATAAAAGAATGTC CCACACAAAAATTTGATGGCGTAGTATTGGCGGTTGGACATAAGATATTTGATACCATTGATGTTTTATCGCTATTAAAA ACTTCTCATGTTGTTTATGATGCTAAGGCTGTACTGGATAAATCAATAGTTGATGGAAGGCTTTAA Protein sequence : MENIKVAVLGLGYVGLPLARLFSTKYPTVGFDINSERVKALLTGHDTTLEITDELLQSALRDGFICTSTIDDIRECNFYI VAVPTPVDKNNNPDLTPLYKASEVVGAVISNGDIVVYESTVYPGVTEEECIPIVERISGLRFNQDFFAGYSPERINPGDK LHTVEKIKKITSGSTYESGKKINEVYASVIEAGTHLAPSIKVAEAAKVIENAQRDINIAFVNELSKIFNLMEIDTHDVLE AAGTKWNFLSFKPGLVGGHCIGVDPYYLAQCAQNYGYHPEIILAGRRTNDGMGEYVANQVIKLMIKKQLNVLNSNILILG FTFKENCPDVRNTRVIDIYNVFKEYNINTTIYEPLADKAIVKHEYNIDIIKECPTQKFDGVVLAVGHKIFDTIDVLSLLK TSHVVYDAKAVLDKSIVDGRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 4e-110 | 58 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 4e-110 | 58 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-103 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TREPR_0345 | YP_004532535.1 | VI polysaccharide biosynthesis protein VipA/tviB | VFG0431 | Protein | 2e-110 | 58 |
