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Name : TREPR_1396 (TREPR_1396) Accession : YP_004531568.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2901255 - 2902757 bp Length : 1503 bp Strand : + Note : identified by match to protein family HMM PF00437 DNA sequence : ATGACAAAATTCACAAGCCTTGAAAATTACGAACCTATTCCGGAAGGGGGATCCCAATACCCCATAGAATTCATCGAAGC CCGGGGATTTATCAAACTCCGGGAGGATGAAAAGCTGGTAGAAATCGGCTTTACGGAAAAAGCCGAAGAACTCATAAAGG GCATACTCCGTAACTATCATAAAAAGAGTGTGGTTTTTATCCCCATAGATCCGGCAGAACTGTCCGCCTACCTGGGAAAT AAGCTGGGTGAGATTCAGGCGCCGGAAAACCGGGAAGAGCCGGAGGATGATTCAGTATTGCTGGACAAACTGGCAAACGA TGCGCCGATTATCAACCTGGTAAATTCCATCTGTATCGAGGGCATACGTTCCGGTGCATCGGACATCCATCTGGAATCCA CAGGTCCCCGGCCCGGCGTTCCCGGGGGGCTGCGTGTACGTTACCGCCTGGACGGTATTTTGCGGACCGTAAAAACCATT GAAGGCAGCCGCTTTCCGGCAATTTCTTCCCGGATAAAGGTTATGGCTAACCTCAACATCCTTGAACGGCGCCAGCCCCA GGATGGCAGGATCACCGTAAAGCTTGGAAACGAACAGGTGGATCTCCGGGTATCCATAGTGCCTGTGGCCGGGGGCGAGT CAATAGTTCTGCGCATACTGGGCAAAAAGGCTTCAGTTTCACTCACGGAACTGGGTTTTCATGATGAACAAGTTCAGGCC CTGAAACGGCTGCTCAGGATGCCCCACGGGCTGATCCTCATCACCGGCCCCACAGGAAGCGGGAAGACCACTACCCTGAA CGCCATGCTCAGGGAAATTGTGTCAGATTCGTTAAAAATAGTCGCCATTGAGGACCCGGTAGAATTTCTGATGGACGGGG TCAACCAGATCCAGATCAATGAACAGATAGGCCTGGGTTTCGACATACTCCTCAGGAGGGTACTGAGGCAGGACCCCAAT GTGATCATGATCGGAGAAATCCGGGATTCCGCCACCGCGGAGATCGCCCTCCGCTCAGCCCTGACCGGGCACCTGGTACT GTCAACCCTGCACACCAACGATGCTGTTTCGGTGATACCCCGGCTTATCAACATGGGCATTGAACCCTACCTGATCGCCT CGGTGCTCCGGGGAGCGGCGGCCCAGCGCCTGGTACGCCGGATTTGCCCCAATTGCAAGGAGGCCTATACCCCTGGACCG GAGGAACAGCGCTTCCTGGCTGCCGCGAACATTTCTGCGGACACCCTCTACCATGGGCAGGGTTGTTCCGTCTGCGGTTT TACAGGGTTTTCAGGGAGGACCATAGCAGCAGAACTGTTCACTAGCAGCAGCGGCCTTGAAGACCTGATCCTGGGACGGG CCAATGGGGCGGCCCTCACGGGGTATCTACAAAAACAGGGTATGAAAACCCTGCTTGAGGACGGGTTGGGGAAAGCCCTA GGGGGCATTACCACCCTCGCCGAAGTAGAACGGGAGATCATCCTGGCCAGCGGAGGCGCCTGA Protein sequence : MTKFTSLENYEPIPEGGSQYPIEFIEARGFIKLREDEKLVEIGFTEKAEELIKGILRNYHKKSVVFIPIDPAELSAYLGN KLGEIQAPENREEPEDDSVLLDKLANDAPIINLVNSICIEGIRSGASDIHLESTGPRPGVPGGLRVRYRLDGILRTVKTI EGSRFPAISSRIKVMANLNILERRQPQDGRITVKLGNEQVDLRVSIVPVAGGESIVLRILGKKASVSLTELGFHDEQVQA LKRLLRMPHGLILITGPTGSGKTTTLNAMLREIVSDSLKIVAIEDPVEFLMDGVNQIQINEQIGLGFDILLRRVLRQDPN VIMIGEIRDSATAEIALRSALTGHLVLSTLHTNDAVSVIPRLINMGIEPYLIASVLRGAAAQRLVRRICPNCKEAYTPGP EEQRFLAAANISADTLYHGQGCSVCGFTGFSGRTIAAELFTSSSGLEDLILGRANGAALTGYLQKQGMKTLLEDGLGKAL GGITTLAEVEREIILASGGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-80 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-80 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TREPR_1396 | YP_004531568.1 | general secretion pathway protein E | VFG2048 | Protein | 6e-81 | 46 |
| TREPR_1396 | YP_004531568.1 | general secretion pathway protein E | VFG0182 | Protein | 4e-72 | 44 |
| TREPR_1396 | YP_004531568.1 | general secretion pathway protein E | VFG1876 | Protein | 6e-71 | 43 |
| TREPR_1396 | YP_004531568.1 | general secretion pathway protein E | VFG1880 | Protein | 2e-64 | 41 |
