|
Name : TREPR_2283 (TREPR_2283) Accession : YP_004530786.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 1951205 - 1952773 bp Length : 1569 bp Strand : + Note : identified by match to protein family HMM PF02384 DNA sequence : GTGGCCAAACGCGCCCCCAAACCAGTCAAAGAACTCTCCCTCGAAAGCGTCCTCTGGAATTGCCGGGTAGTTTTGCGGAA CAAATGCAACAAGCCGACCAACCGGGACGCCGTATTGGCCCTCATCTTCCTGAAATTTGCCGGTGACAAGTTTGAAAAAC GGCGGCAGGAGATAATCGCCGAGGAAGGGGATATCCCGGTTTTCCTTGAAAAACCTTCGTTCTATCTGGCTTCCAATGTT TTCTACCTTAACGAAACCTCCCGCTGGTCCTACATCGTAAAAAATGCAAGCGATGATAAAATAGCCGTCATGCTGGATCA GGCAATGGCAGACATTGAAGATAAAAATGAATCCCTGAAAGGCGCCCTACCCCAGCGGTTTTTCTCCAGCCTGGGGGTAA ACAGCAAGGATATAAAATCCCTCATCGACGAAATAAATAAAATATCAGAAGAACGGTTCCACGAAAAAGATTTAATCGGA CGGGTCTACGAATATTTTTTACAACAGTTCGCCATGGATGAAGCAAAAGAAAAGGGAGAATTTTATACACCCAAGGCAAT TGTCAATCTGATTGCCGAATTGATAGAACCCTATAAGGGCAGAATCTATGACCCCTGTTGCGGTTCCGGCGGCATGTTTG TACAATCCCTCAAATTTGTAGAAAGCCATAATGGCAATAAAAATAACATATCCATCTTTGGGCAGGAATCCGATCCCGAT ACCCGCAGGCTGGCTAAAATGAATCTGGCCATACGGGGCATATCAAATAACCTGGGGGATAAAAATGCCTCCTCCTTTAC CGATGACCGGCAAAAGGATTTAAAAGTAGATTTTATCATGGCGAATCCTCCCTTCAACCTTAAGGCTTGGCGTGGTGAAG ACGAATTAACCAATGATCCCCGCTGGTCAGGCTACGGTACTCCCCCGGTAAGCAATGCCAATTATGCCTGGATACTCCAT ATACTTTCCAAACTTGATGTGAGTAACGGTATAGCGGGCTTTCTGCTTGCAAATGGCGCATTGGGAGCTGGGGCGGAAGA ATACAATATTAGGAAACAACTTATTGAGAATGATAAAATAGAGGCAATAATTGTTCTGCCCCGTGAAATGTTTTACAGTA CCGATATATCCGTAACCCTATGGATATTAAATAACAATAAGAAACCGCGAACCTTAAATAAACGAAAATTGCGGGACAGA CAAAACGAAGTACTTTTTATTGACCTCCGCACATGGAATAAAAATGTATACGAAAAAAGTTATGTCACCTTTGATGATTC ACAAATAGCTGCCGTCAAAAAAATCTATACCAATTGGCAAAGCGCCGAAAAGGGCTACAAAAATGTTCCAGAACTCTGTA AATCCGTAAAAATAACGGACATACGAAAGAATGATTATTCCCTTGTGCCAAGCAAGTATATTAAGTTTATTGACCACGAT TTGGATATAGATTACCAGAAAGAAATGAAAAGAATTCAAAAAGAGATGAAGGATATTTTGAAGGAGGAGAAGAAATCTCA GGAAATGCTGGAATCCGCTTTTAAGGGAATCGGATATGGCATTAAATAA Protein sequence : MAKRAPKPVKELSLESVLWNCRVVLRNKCNKPTNRDAVLALIFLKFAGDKFEKRRQEIIAEEGDIPVFLEKPSFYLASNV FYLNETSRWSYIVKNASDDKIAVMLDQAMADIEDKNESLKGALPQRFFSSLGVNSKDIKSLIDEINKISEERFHEKDLIG RVYEYFLQQFAMDEAKEKGEFYTPKAIVNLIAELIEPYKGRIYDPCCGSGGMFVQSLKFVESHNGNKNNISIFGQESDPD TRRLAKMNLAIRGISNNLGDKNASSFTDDRQKDLKVDFIMANPPFNLKAWRGEDELTNDPRWSGYGTPPVSNANYAWILH ILSKLDVSNGIAGFLLANGALGAGAEEYNIRKQLIENDKIEAIIVLPREMFYSTDISVTLWILNNNKKPRTLNKRKLRDR QNEVLFIDLRTWNKNVYEKSYVTFDDSQIAAVKKIYTNWQSAEKGYKNVPELCKSVKITDIRKNDYSLVPSKYIKFIDHD LDIDYQKEMKRIQKEMKDILKEEKKSQEMLESAFKGIGYGIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-99 | 42 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 1e-99 | 41 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 3e-100 | 41 |
