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Name : TREPR_2356 (TREPR_2356) Accession : YP_004530716.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1873512 - 1875050 bp Length : 1539 bp Strand : - Note : identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 DNA sequence : ATGGCAACAAAAAAGTCGGGACGTTTGTATATTATCGGGGCGGGGTTTGCAGGGCAGGCCCTAGCAAATGAAATTAAAAC CAAGGCAATCTTCGGGGAACTCGTCGCCTTTCTGGATGACGATCCCGAAGTCATGGGCCGTAAAATCGACGGCATCCCGG TCTTGGGGCCTATCAAGGATGTGGCCCGGCTCCTGCGGATGAACCCCGCGGATGAAGCCATCATCGCCATGCCCGGGGCT TCCCGGGAATACATAAAAGAAATCTACGGCATACTGAAACGGGCGGGCTTTGAGCGGATCAGGATACTTCCCGGGATGTC CCAGAGCATCGAAGGGGATGCCCGGCTTATCCAGACCCGCTCAATCGATCCCCAGGACCTCCTGGGCCGTACCCCCGTGG CGGTAAACATCAGGCAGAGCCTGGCATACCTCCGGGGAAAGCGGGTATTGGTCACCGGCGCCGGGGGCTCCATAGGCAGC GAACTTTGCCGGCAACTCCTCTCAGGCGGTGTATCCCGGCTCTACCTTCTGGGGCATGGTGAAAATTCTATCTACCAGAT AGACCGGGAACTGCGGCTCCTCCAGGAAGAGGGGGTGGGCGAAAAAACCACCCTGATCCCTATCATCGGGGACCTCAAGG ACCGGGACTATATGCATTTCCTCCTGGCCCGGCTGAAAGCGGATGTGATCTTCCATGCAGCGGCCTACAAGCACGTGCCC ATGATGGAAGAAAACCCTGTGGCGGTCATAGAAAACAACTTCTTCGGCACCGATAACCTGATCAGCGCCGCCCGGAGCAA CGGGGTAAAACGCTTTGTCCTGATCACCACCGATAAGGCGGTGAACCCCGTCTCAGTTTACGGCGCCTCCAAGTACCTTT GCGAACGCCTGGTGCTGGATGCGGCAAAAAAAGCGGGGCTTAACTACATGGTGGTGCGGTTCGGGAATGTCCTGGGTTCC CGGGGCTCCATCATGCCCCTGTTCCAGAAACAAATCGAAAAGGGCGGCCCGGTAACCATTACCCACCCGGAGATGCGCCG CTACTTTATGACCATCCCCGAAGCCTGCTCCCTGGTACTCAAAGCCGGCGGGGTGGGTGAAAACGGCAAACTCTACCTTC TGGACATGGGGGAGCCCGTGCGTATCCGGGATATGGCTGAACAGATGATCCGCTTCTACGGCTTTGAGCCTGAAGAGGAC ATCAAGATCGAATATATCGGACTGCGGCCCGGGGAACGGCTGGACGAGGATCTTTGGGGACGGGATGAAATCCCGGTGGA TACCGAATTCAAGCGGATTCTCCGGGTGGAGCGGAAACAGCCCGTTAACCCGGACCCGGCATTTCCAAGCCCGGCTCTGG CAGACGAGATTCCCGCAGAGGAACTTCTGGAAAAACTCAGGCCCATCGTTCACTTTGATCCGGAACAGCCCACTCACTAC CGGGACGCCGTGCTGCTTAGGGATGTGCTAGAAGAAGTCATCCCCAGCCTCATGCCTGCCCGCGCCCTGGCGCCCCAGGG GAAAGTGTATGGATACTGA Protein sequence : MATKKSGRLYIIGAGFAGQALANEIKTKAIFGELVAFLDDDPEVMGRKIDGIPVLGPIKDVARLLRMNPADEAIIAMPGA SREYIKEIYGILKRAGFERIRILPGMSQSIEGDARLIQTRSIDPQDLLGRTPVAVNIRQSLAYLRGKRVLVTGAGGSIGS ELCRQLLSGGVSRLYLLGHGENSIYQIDRELRLLQEEGVGEKTTLIPIIGDLKDRDYMHFLLARLKADVIFHAAAYKHVP MMEENPVAVIENNFFGTDNLISAARSNGVKRFVLITTDKAVNPVSVYGASKYLCERLVLDAAKKAGLNYMVVRFGNVLGS RGSIMPLFQKQIEKGGPVTITHPEMRRYFMTIPEACSLVLKAGGVGENGKLYLLDMGEPVRIRDMAEQMIRFYGFEPEED IKIEYIGLRPGERLDEDLWGRDEIPVDTEFKRILRVERKQPVNPDPAFPSPALADEIPAEELLEKLRPIVHFDPEQPTHY RDAVLLRDVLEEVIPSLMPARALAPQGKVYGY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-68 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| TREPR_2356 | YP_004530716.1 | capsular polysaccharide biosynthesis protein | VFG1300 | Protein | 2e-72 | 46 |
