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Name : clpA (TREPR_2813) Accession : YP_004530291.1 Strain : Treponema primitia ZAS-2 Genome accession: NC_015578 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpA Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1358874 - 1361420 bp Length : 2547 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639 DNA sequence : ATGAAAATCAGCCGCCATGTGCAGGCTATCATCAATGCCGCCTATAATGAGGCCAAGGTACGTAACCACGAATACCTGAC CCCCGAACATATACTCTATGCCGCCCTTGCATTCAATGAGGTACAGAGCATACTTTCATCCTGCGGGGCTAACCTGGATC AACTTAAACATGGGATGGAAAACTACTTTGAACAGCAAGTGCCCCCCACCCAGGATAACACCGAGCCCACCCAAACTGTG AGTTTCCAGAGCGTCCTGGAACGAGCAGTGCTTCAAAGCCAGTCATCCCAGAAGGAAACCCTGGATATTGCGGACATTCT GGTCTCCCTCTACGATGAGGAACGGAATTATTGCGCCTATTTCCTCCGCAAGTCGGGAATCAGGAATCGGCTGGAGCTTT TGGAGAGTCTTTCCCGGGAATATGAGGATGAAGGTGAGCAGGGTTTCAATTTTTCCCGTGCCTATACTCCGAAATTCACC CGTATGAACCCCCACATGAATGACGGAGACGGCCATGAGGAAATTCCCTTTGAGGGTGAGGCTTCCGATGCGGCCCAGAA AACTAAGGCCAATAAAAAGAGCGCCCTGGAGCGCTACGCCACGGAACTCACCGCCCTGGCAAAGCTGGGCCGGCTGGAAC CGGTCATAGGCCGGCAGACCGAACTGGACCGGACCGTGCAGGTACTTTGCCGCCGGCTCAAAAACAACCCGGTCCATGTG GGCGATTCCGGAGTAGGAAAAACCGCCATCACCGAAGGGCTGGCCCAGCGCATAGTCGCCGGGAACGTGCCCCCCACTTT GAAAGATTTCGCCATCTATTCCCTGGATATGGGCGCCCTGGTAGCGGGAACCAAGTACCGGGGGGACTTTGAGGAACGGA TCAAGCGGGTCATTGAAGAAATCCTGAAAAAAGAAAAGGCCATCCTCTTTATCGATGAAATCCACACCCTGGTAGGGGCC GGCTCAGTCTCCGGCAGCGCTTTAGATGCCTCAAACCTGCTCAAACCTGCCCTTGCATCGGGAAAAATCCGCTGCATCGG GTCCACCACCCACGAGGAATACGGCAAATTCTTTGACAAAGACCGGGCCCTGTCCCGGCGTTTCCAGAAAATTGACATTG ACGAGCCCAGCCAGGAAGACGCCATCGCGATCCTCAAGGGGCTCAGGTCCAAATACGAAGAATACCATCGGGTTAAGTAC AGTGATGAGGCCGTGGAAGGGGCGGTGCGTCTTTCCGCCCAGTTTATCACCGAACGGCGGCTGCCGGATAAAGCCATCGA TGTGATCGACGAAGCCGGCGCCTTTGCCCGGATCCAGGCTTTCAAGGACAACGGCAAGACCGAAAACCCCGCCGATACTC TTGCCGGCGCTTCTACCGCTGCAGGAAACTCCTCCGGCGCGGATACTCCGGCTACCGGTGACCCTGGGGAGCCCACACTT ACCAGAGGCCCAACCCTTAGCAGCGGCCCGGTGGGCGCCGAAACCCCAAGGGAGGAACCCATTTCTGTGCAGGAAGGGAC CGTTGCGGTGATAGACATCGGCCTCCCCCTGATCGAGACCGTGGTGTCCAAAATAGCCCGGATCCCCGAGCGGTCAGTGG GTGAAAACGAAAAAGACAAGCTCCGGTTCCTGGAACAAAAGCTCCGGGAGCGTATTTTCGGCCAGGACGAGGCGATCCTG GCGGCGGTCAAGGCAGTCAAACGATCCCGGGCAGGCTTCCGGGCGGACAACAAGCCCGTGGCAAACTTCCTCTTTGTGGG CCCCACCGGGGTGGGGAAAACCGAACTGGCCCGCCAACTGGCGGATATCCTGGGTGTGCCCATGCACCGCTTCGACATGA GCGAATACCAGGAAAAGCACACCGTCTCCCGGCTCATCGGATCCCCCCCGGGTTATGTGGGCTATGAGGAGGGGGGCCTC CTTACGGACGTCATACGGAAACAGCCCCATGCGGTCGTTTTATTGGACGAAATCGAAAAAGCCCATCCGGATATTTACAA TATACTTCTCCAGATCATGGACTACGCCACCCTGACGGACAACAATGGCCGCAAGGCGGATTTCCGCAATGTGGTTTTCA TCATGACCAGCAACGCCGGAGCCCGGGAAGTCGGAAAAAGCCTCATCGGCTTTGGGGAGCGTATAGGCGGGGAAGCGGAA CTGGATAGCGCAGTAGAAAAACTGTTCACCCCGGAATTCCGCAACCGCCTGGACGCGGTGGTCCGCTTCGGCCACCTGTC CAAGGAAGTGATGGAGTCCATAGTCCGCAAGGAACTGGAAATTTTCCGGGACCAGCTGGCAGAAAAAAAGATAAGCCTTT CAATAAGCGATGCCTGCGTGGAACACCTGGCCGAAGAAGGCTACAGCCAGGAATTCGGCGCCCGCAATGTGGGCCGTGTT ATCGAAGATAAGATCAAGTCCTTCTTTGTGGACGAGGTCCTCTTCGGCCGGCTCGTCTCAGGCGGCGCCGCCCAGGCAGA CTGGCGGGATGGGGAGTACCGGATCGAGGTGGCAGGCGCCAGAGAGGCGGTGACAGCGGAAGCCTGA Protein sequence : MKISRHVQAIINAAYNEAKVRNHEYLTPEHILYAALAFNEVQSILSSCGANLDQLKHGMENYFEQQVPPTQDNTEPTQTV SFQSVLERAVLQSQSSQKETLDIADILVSLYDEERNYCAYFLRKSGIRNRLELLESLSREYEDEGEQGFNFSRAYTPKFT RMNPHMNDGDGHEEIPFEGEASDAAQKTKANKKSALERYATELTALAKLGRLEPVIGRQTELDRTVQVLCRRLKNNPVHV GDSGVGKTAITEGLAQRIVAGNVPPTLKDFAIYSLDMGALVAGTKYRGDFEERIKRVIEEILKKEKAILFIDEIHTLVGA GSVSGSALDASNLLKPALASGKIRCIGSTTHEEYGKFFDKDRALSRRFQKIDIDEPSQEDAIAILKGLRSKYEEYHRVKY SDEAVEGAVRLSAQFITERRLPDKAIDVIDEAGAFARIQAFKDNGKTENPADTLAGASTAAGNSSGADTPATGDPGEPTL TRGPTLSSGPVGAETPREEPISVQEGTVAVIDIGLPLIETVVSKIARIPERSVGENEKDKLRFLEQKLRERIFGQDEAIL AAVKAVKRSRAGFRADNKPVANFLFVGPTGVGKTELARQLADILGVPMHRFDMSEYQEKHTVSRLIGSPPGYVGYEEGGL LTDVIRKQPHAVVLLDEIEKAHPDIYNILLQIMDYATLTDNNGRKADFRNVVFIMTSNAGAREVGKSLIGFGERIGGEAE LDSAVEKLFTPEFRNRLDAVVRFGHLSKEVMESIVRKELEIFRDQLAEKKISLSISDACVEHLAEEGYSQEFGARNVGRV IEDKIKSFFVDEVLFGRLVSGGAAQADWRDGEYRIEVAGAREAVTAEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-121 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_004530291.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | VFG0079 | Protein | 1e-131 | 44 |
| clpA | YP_004530291.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | VFG0080 | Protein | 8e-119 | 41 |
