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Name : clpC1 (JDM601_3885) Accession : YP_004525139.1 Strain : Mycobacterium sp. JDM601 Genome accession: NC_015576 Putative virulence/resistance : Virulence Product : ATP-dependent protease ATP-binding subunit ClpC1 Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4122896 - 4125361 bp Length : 2466 bp Strand : - Note : - DNA sequence : ATGCTCAACCACAACTACATCGGGACCGAGCACATCCTGCTCGGGTTGATCCACGAGGGCGAGGGCGTGGCCGCCAAGTC GCTGGAGTCGCTGGGCATCTCCCTGGAGGGGGTGCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCGCCGT CCGGGCACATCCCGTTCACCCCGCGCGCCAAGAAGGTGCTCGAGCTGAGTCTGCGTGAGGCGTTGCAGCTCGGCCACAAC TACATCGGCACCGAGCACATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGCGTCGCGGCACAGGTGCTGGTCAAGTTGGG CGCCGACCTGACCCGGGTGCGCCAGCAGGTCATCCAGCTGCTGAGCGGCTACCAGGGCAAGGAGACCGCCGAGGCCGGCA CCGGCGGCCGGGGCGGAGAGTCCGGCTCGCCGTCCACCTCGCTGGTGCTCGACCAGTTCGGCCGCAACCTGACCGCCGCG GCCATGGAGGGCAAGCTCGACCCGGTGATCGGCCGGGAGAAGGAAATCGAGCGGGTCATGCAGGTGCTTTCCCGGCGCAC CAAGAACAACCCGGTGCTGATCGGTGAGCCCGGCGTCGGCAAGACGGCCGTGGTGGAGGGGCTGGCGCAGGCGATCGTGG CCGGCGAGGTCCCCGAGACGCTGAAGGACAAGCAGCTCTACACCCTGGACCTGGGTTCGCTGGTCGCCGGCAGCCGCTAC CGCGGTGACTTCGAGGAGCGGCTGAAGAAGGTCCTCAAGGAGATCAACACCCGCGGCGACATCATCTTGTTCATCGACGA GCTGCACACCCTGGTGGGCGCCGGCGCGGCCGAGGGCGCGATCGACGCGGCCTCGATCCTTAAGCCCAAGCTGGCGCGCG GCGAGCTGCAGACGATCGGCGCCACCACCCTCGACGAGTACCGCAAGTACATCGAGAAGGACGCCGCGCTGGAGCGCCGG TTCCAGCCGGTGCAGGTCGGTGAGCCCACCGTGGAGCACACCATCGAGATCCTCAAGGGCCTGCGGGACCGCTACGAGGC CCACCACCGGGTCTCGATCAGCGACTCGGCGATCGTGGCCGCGGCCACCCTGGCCGACCGCTACATCAACGACCGGTTCC TGCCGGACAAGGCGATCGACCTGATCGACGAGGCCGGTGCACGGATGCGGATCCGCCGGATGACCGCGCCGCCGGACCTG CGCGAGTTCGACGAGAAGATCGCCGACGCGCGCCGCGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGC CAGCCTCCGCGACCGCGAGAAGCAACTGGTCGCCCAGCGCGCAGAGCGTGAGAAGCAGTGGCGTGCCGGGGATCTCGACG TCGTGGCCGAAGTCGATGACGAGCAGATCGCCGAGGTGCTGGGCAACTGGACCGGCATCCCGGTGTTCAAGCTGACCGAG GCCGAGACCACCCGCCTGCTGCGGATGGAAGACGAGCTGCACAAGCGGATCATCGGGCAGAAGGATGCCGTCAACGCCGT CTCGAAGGCGATCCGCCGCACCCGTGCCGGGTTGAAAGACCCCAAGCGGCCGTCCGGCTCGTTCATCTTCGCCGGTCCCT CCGGTGTCGGTAAGACCGAGCTGTCCAAGGCGCTGGCGGAGTTCCTGTTCGGCGACGACGATGCGCTCATCCAGATCGAC ATGGGCGAGTTCCACGACCGCTTCACCGCCTCTAGGCTGTTCGGGGCCCCTCCGGGCTACGTCGGCTACGAGGAGGGCGG CCAGCTGACCGAGAAGGTGCGGCGCAAGCCGTTCTCGGTGGTGCTGTTCGACGAGATCGAGAAGGCGCACCAGGAGATCT ACAACTCGCTGTTGCAGGTCCTCGAGGACGGTCGGCTCACCGACGGTCAGGGTCGCACGGTGGACTTCAAGAACTGCGTG CTGATCTTCACCTCCAACCTGGGCACTTCCGACATCTCCAAGGCGGTCGGACTGGGCTTCACCCAGGGCGGCGGGGAGAA CAACTACGAGCGGATGAAGCTCAAGGTCAACGACGAGCTCAAGAAGCACTTCCGCCCGGAGTTCCTCAACCGCATCGACG ACATCATCGTCTTCCACCAGCTGTCCAAGGAAGAGATCATCCAGATGGTGGATCTGATGATCGGCCGGGTGGCCAAGCAG CTCAAGGCCAAGGACATGGACATCGCGCTGTCCGACAAGGCCAAGTCGCTGCTGGCCAAGCGTGGCTTCGACCCGGTGCT GGGGGCGCGTCCGCTGCGGCGCACCATCCAGCGCGAGATCGAGGACCAGCTCTCGGAGAAGATCCTGTTCGAGGAGCTCG GCCCCGGCCAGCTGGTGACCGTCGACGTCGACAATTGGGATGGCGAGGGTCCGCAGGAGGACGCGGTGTTCACCTTCGTC GGCAGCCAGAAGCCGGCGGCGGAGGAGTCCGATCTGGCCAAGGCCGGCGCGCCCACCGCGGACTAG Protein sequence : MLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHN YIGTEHILLGLIREGEGVAAQVLVKLGADLTRVRQQVIQLLSGYQGKETAEAGTGGRGGESGSPSTSLVLDQFGRNLTAA AMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVAGEVPETLKDKQLYTLDLGSLVAGSRY RGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGATTLDEYRKYIEKDAALERR FQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSISDSAIVAAATLADRYINDRFLPDKAIDLIDEAGARMRIRRMTAPPDL REFDEKIADARREKESAIDAQDFEKAASLRDREKQLVAQRAEREKQWRAGDLDVVAEVDDEQIAEVLGNWTGIPVFKLTE AETTRLLRMEDELHKRIIGQKDAVNAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGDDDALIQID MGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNCV LIFTSNLGTSDISKAVGLGFTQGGGENNYERMKLKVNDELKKHFRPEFLNRIDDIIVFHQLSKEEIIQMVDLMIGRVAKQ LKAKDMDIALSDKAKSLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEELGPGQLVTVDVDNWDGEGPQEDAVFTFV GSQKPAAEESDLAKAGAPTAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 80 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC1 | YP_004525139.1 | ATP-dependent protease ATP-binding subunit ClpC1 | VFG0079 | Protein | 0.0 | 60 |
| clpC1 | YP_004525139.1 | ATP-dependent protease ATP-binding subunit ClpC1 | VFG0080 | Protein | 4e-144 | 51 |
