Gene Information

Name : pykA (JDM601_2128)
Accession : YP_004523382.1
Strain : Mycobacterium sp. JDM601
Genome accession: NC_015576
Putative virulence/resistance : Virulence
Product : pyruvate kinase PykA
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 2298632 - 2300050 bp
Length : 1419 bp
Strand : -
Note : -

DNA sequence :
GTGAATCGACGCGGCAAGATCGTCTGTACTCTCGGTCCGGCGACCCACTCCGCGGAGATGGTCCGAGCATTGGTCGACGC
GGGCATGGATGTGGCCCGGCTGAACTTCAGCCACGGCGACCACAAAGACCATCAAGCCTCTTACCAATGGGTGCGCAGCG
CTTCGGATGCGACCGGGCGGGCGGTCGGTGTGCTGGCCGACCTGCAGGGACCCAAGATCCGGCTGGGACGCTTCGCCGAC
GGCTCCGCCTACTGGGCCAACGGCGAGACCGTCCGCATCACGGTCTCCGACTGTCCGGGCGGCCATGATCGGGTATCCAC
CACCTACAAACACCTCGCGGCCGACGCCGCACCCGGCGACCGTGTCCTGGTCGACGACGGCAAGGTCGGCCTGGTGGTGG
AACACATCGACGGCGAAGACGTGGTGTGCACCGTCACCGAGGGCGGCACGGTCAGCAACCACAAGGGCATATCGCTGCCG
GGCATGAACGTCTCCGCTCCCGCGCTGTCCGAGAAGGACATCGAAGACTTGGAATTCGCGCTGAACCTCGGCGTCGACAT
GGTGGCACTGTCCTTCGTGCGCTCGCCGTCGGATGTGGAGCTGGTGCACGAGGTGATGGACCGGGTCGGTCGCCGGGTCC
CGGTGATCGCCAAACTGGAGAAGCCGGAGGCCATCGAGAACCTCGAGGCCGTGGTGCTGGCGTTCGACGCGGTGATGGTG
GCCCGCGGCGACCTGGGGGTGGAGCTCGCACTCGAAGAAGTGCCGTTGGTGCAGAAGCGCGCCATTCAGGTGGCGCGCGA
GAACGCCCGCCCGGTCATCGTCGCGACCCAGATGCTGGAGTCGATGATCTCGAATTTCCGGCCCACCCGCGCCGAGGCGT
CCGACGTGGCCAATGCGGTGCTCGACGGCACCGACGCGGTGATGCTGTCCGGTGAGACGGCCGTCGGCAAGTACGCTCTG
GAGGCGGTACGGACGATGAGCCGGATCGTGTGCGCGGTGGAGGAGAATTCCACTGCGGCACCGCCGTTGTCGCATATTCC
GCGGACCAAGCGCGGGGTGATCTCGTATGCGGCCCGCGAGATCGGCGAGCGCCTCGACGCCAAGGCACTGGTGGCGTTCA
CCCAGTCCGGTGACACCGTTCGCCGGCTGGCCCGGCTGCACACCCCGCTACCGCTGCTGGCGTTCACCGCGCTTCCCGAG
GTCCGTAGCCAGCTCGCAATGACCTGGGGCACTGAGACTTTCATTGTTCCGCAGATGCAGTCGACCGATGGGATGATCCG
TCAGGTCGACAAGGCACTGCTGGACCTGGGCCGTTACAAGCGCGGCGACCTGGTGGTGATCGTCGCGGGCGCGCCGCCGG
GCACCGTCGGTTCGACCAACCTGATCCACGTGCACCGGATCGGCGAGGACGACGTCTAG

Protein sequence :
MNRRGKIVCTLGPATHSAEMVRALVDAGMDVARLNFSHGDHKDHQASYQWVRSASDATGRAVGVLADLQGPKIRLGRFAD
GSAYWANGETVRITVSDCPGGHDRVSTTYKHLAADAAPGDRVLVDDGKVGLVVEHIDGEDVVCTVTEGGTVSNHKGISLP
GMNVSAPALSEKDIEDLEFALNLGVDMVALSFVRSPSDVELVHEVMDRVGRRVPVIAKLEKPEAIENLEAVVLAFDAVMV
ARGDLGVELALEEVPLVQKRAIQVARENARPVIVATQMLESMISNFRPTRAEASDVANAVLDGTDAVMLSGETAVGKYAL
EAVRTMSRIVCAVEENSTAAPPLSHIPRTKRGVISYAAREIGERLDAKALVAFTQSGDTVRRLARLHTPLPLLAFTALPE
VRSQLAMTWGTETFIVPQMQSTDGMIRQVDKALLDLGRYKRGDLVVIVAGAPPGTVGSTNLIHVHRIGEDDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 6e-65 41
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 2e-64 41
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 1e-64 41
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 6e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pykA YP_004523382.1 pyruvate kinase PykA VFG0479 Protein 3e-65 41