Gene Information

Name : MSWAN_1217 (MSWAN_1217)
Accession : YP_004520035.1
Strain : Methanobacterium sp. SWAN-1
Genome accession: NC_015574
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : 3.6.3.4
Position : 1299362 - 1301440 bp
Length : 2079 bp
Strand : +
Note : TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: mev:Metev_1829 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; H

DNA sequence :
TTGGATCACCACGATTCTAATCATCAGATGAAACATACGGATGAATCTCATGAAAAAAATGGTGAATGTGTTGTATGTGG
AGGAAAACTAACTGAAGAACATAGAATGAAAGGAGAACACGTTCATTCTGGCATGATTGATGATTTAAAAAAAAGATTCT
TGATATCATTACTCATAACCATACCTATTCTTATTTTATCACCTACAATTCAAGGATTAGTTGGTTTAGGTAACTCATTC
AGATTTACAGGAGATTTATACCTTCTTTTTGCATTATCGTCCATAGTCTATTTTTATGGTGGTTATCCATTTTTTAAAGG
ATTTTTCAACGAAATCAAATTGAGAACACCTGGAATGGATATGTTAATTTCTGTTGCTATTACCAGTGCTTACCTCTACA
GCAGTGCAGTTGTTTTTGGTCTCATGGGCGAAGTTTTTTTCTGGGAACTTGCTACACTAATTGATATTATGCTTATTGGG
CACTGGTTGGAGATGAAATCCGTGATGGGTGCTTCCAGAGCACTTGAAGAACTTGTAAAACTCATGCCATCAAATGCACA
TAAAATAATGTTTGATAAGAGCATAATAGACGTTCCTTTAGATGAACTGAGTGTAGAAGACCATGTAGTCATTAAACCGG
GAGAAAAGGTTCCAGTTGATGGAGAAATTATCAGAGGGAATACTTCTATCGATGAATCAATGATTACGGGTGAATCAGAA
CCTGTATTTAAGGAAATTGGTGCCGAAGTCATTGGTGGATCTATTAATGGGGATGGATCCATTACTGTGGAAATTAAAAA
AACTGGGAAGGATTCATTCCTTTCAAAAGTTATAACTCTTGTTGAGGAAGCACAGGCAAATAAATCAAAGACACAAAATC
TGGCTGACAGTTTTGCAACATGGCTTACGATAATAGCTCTATCTGGTGGATTTATAACCCTCTTAGTATGGTTAGCCGTT
ACAAATTTGGGATTTGAATTTGCTCTTGAGAGGGCTGTAACTGTAATGGTTATTGCATGTCCACATGCACTTGGACTTGC
AGTACCATTGGTTGTTGCAGTTTCAACTTCCCTATCAGCACGAAATGGGCTTTTAATTAGAAATCGTGCTTCTTTTGAAA
GATCACGAGACGTTAATGCCATAATATTTGACAAAACAGGCACACTTACACAAGGAAAGTTTGGTGTTACTGATATTATT
CCTTTAAGCAGTGAATATAATGAAAATGATGTTTTAAAATATGCAGCTTCACTTGAATCATATTCTGAGCATCCTATTGC
TAAAGGAGTTGTAAATTCAGTTAAAGAGACTTTTGACGTTAAAGATTTTAAATCAATCCCTGGAAAGGGTATTCAAGGTA
AAATTAATACAAAAAACGTTGAGGTAGTAAGTCCAAGATATTTAAAAGAGCTTAACCTTGATATTTCTAATGAAAAGGTA
GATAAACTCTTGTCTGAAGGAAAAACAATTGTTTTTGTAATTATTGAAGCAGAACTTAAAGGTGTAATTGCACTTGCAGA
TATTATAAGGGAAGAGTCCAGAGAAGCTATTAAAGAATTCAGAGATATGGGAATCCAGTGCATGATGATTACGGGGGATA
GAAAAGAGGTTGCAGAATGGGTATCCAAGGAAATTGGACTTGATAAATATTATGCAGGAGTTTTACCACAAGAAAAAGCA
GGAAAAGTTCGAGAAATTCAATCTGAAGGTTTAATTGTTGCTATGACTGGTGATGGTATTAATGATGCCCCTGCCCTTGC
ACAGGCGGATATAGGTATTGCAATCGGTGCAGGTACAGATGTAGCTATTGAAGCTGGTGATGTTGTTTTGGTAAGAAGCA
ATCCTCTTGATGCTGTTTATATAATAAAGCTTTCTAAATCAACCTACAAAAAAATGGTCCAAAATTTAGCTTGGGGAGCT
GGATACAACATTTTTGCCATTCCAATTGCAGCAGGCGTTCTTTATAGTTTTGGAATTCTTTTAACCCCCGCTGCAGGAGT
TATATTAATGTCACTTAGCACCATTATTGTGGCTTTTAATTCAAGAACCCTTAAAATTGAGAAGATTGCTAAAACATAA

Protein sequence :
MDHHDSNHQMKHTDESHEKNGECVVCGGKLTEEHRMKGEHVHSGMIDDLKKRFLISLLITIPILILSPTIQGLVGLGNSF
RFTGDLYLLFALSSIVYFYGGYPFFKGFFNEIKLRTPGMDMLISVAITSAYLYSSAVVFGLMGEVFFWELATLIDIMLIG
HWLEMKSVMGASRALEELVKLMPSNAHKIMFDKSIIDVPLDELSVEDHVVIKPGEKVPVDGEIIRGNTSIDESMITGESE
PVFKEIGAEVIGGSINGDGSITVEIKKTGKDSFLSKVITLVEEAQANKSKTQNLADSFATWLTIIALSGGFITLLVWLAV
TNLGFEFALERAVTVMVIACPHALGLAVPLVVAVSTSLSARNGLLIRNRASFERSRDVNAIIFDKTGTLTQGKFGVTDII
PLSSEYNENDVLKYAASLESYSEHPIAKGVVNSVKETFDVKDFKSIPGKGIQGKINTKNVEVVSPRYLKELNLDISNEKV
DKLLSEGKTIVFVIIEAELKGVIALADIIREESREAIKEFRDMGIQCMMITGDRKEVAEWVSKEIGLDKYYAGVLPQEKA
GKVREIQSEGLIVAMTGDGINDAPALAQADIGIAIGAGTDVAIEAGDVVLVRSNPLDAVYIIKLSKSTYKKMVQNLAWGA
GYNIFAIPIAAGVLYSFGILLTPAAGVILMSLSTIIVAFNSRTLKIEKIAKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 2e-84 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MSWAN_1217 YP_004520035.1 copper-translocating P-type ATPase BAC0629 Protein 2e-156 60
MSWAN_1217 YP_004520035.1 copper-translocating P-type ATPase BAC0079 Protein 5e-114 45
MSWAN_1217 YP_004520035.1 copper-translocating P-type ATPase BAC0383 Protein 1e-89 42