Gene Information

Name : Desku_1201 (Desku_1201)
Accession : YP_004516585.1
Strain : Desulfotomaculum kuznetsovii DSM 6115
Genome accession: NC_015573
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1216690 - 1217376 bp
Length : 687 bp
Strand : +
Note : KEGG: pth:PTH_0245 hypothetical protein; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region

DNA sequence :
ATGAAAAAAATCCTGGTAGCCGACGATGAGGTTAAGATCAGAGAATTGGTGCGTATGTATCTGGAAAAAGAAGGCTTCAG
GGTGGTGGAGGCCGCCGATGGAGCTGCTGCTTTGGATTATCTTGCCCGGGAGCATTTTGATCTGGTGATTCTTGATCTTA
TGATGCCCAATACCGATGGCTGGACGGTATGCCGGGAGATCCGCAAGCGGGATAACCCGGTGCCCATCATTATGCTCACC
GCCCGGGGGGATGAGATTGACCGGGTGCTAGGGCTGGAACTGGGGGCCGATGATTATGTGGTTAAACCATTTAGCCCCCG
GGAACTGGTGGCCCGGGTGAAAGCGGTTCTGCGCCGTTCTGGCGGGGAGAAAAACAGTCCTGAGGTTCTTGTTTATGACG
GGTTGACCATCGACCCTTCTTCCCGGAAGGTAGAAGTCAACGGGCAGGTAGTTAACCTTACTCCCAAGGAGTACGACTTG
CTTTATGTGATGGCCCTATCCCCGGGCCGTGTATTCACCCGGGAACAGTTGCTGGAAAAGGTCTGGGGTTATGATTTCTT
TGGTGAAATGCGGACGGTGGATACCCATATTACCAGGCTCCGGGAAAAGTTGTCCCGTGTTCCGGGAGCACCCCAGTACA
TTGTCACCGTATGGGGTGTGGGTTATAAATTTGAGGTGAACAAATGA

Protein sequence :
MKKILVADDEVKIRELVRMYLEKEGFRVVEAADGAAALDYLAREHFDLVILDLMMPNTDGWTVCREIRKRDNPVPIIMLT
ARGDEIDRVLGLELGADDYVVKPFSPRELVARVKAVLRRSGGEKNSPEVLVYDGLTIDPSSRKVEVNGQVVNLTPKEYDL
LYVMALSPGRVFTREQLLEKVWGYDFFGEMRTVDTHITRLREKLSRVPGAPQYIVTVWGVGYKFEVNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-44 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-43 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 4e-46 52
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-47 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 4e-46 51
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 8e-45 47
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 6e-46 47
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 4e-44 46
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AF162694.1.orf4.gene Protein 3e-35 46
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 1e-38 46
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-33 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 1e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_011595.7057856.p0 Protein 5e-36 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_010400.5986590.p0 Protein 3e-35 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_010410.6002989.p0 Protein 5e-36 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AF130997.1.orf0.gene Protein 3e-36 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AM180355.1.gene1830. Protein 3e-38 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator DQ212986.1.gene4.p01 Protein 5e-41 44
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 1e-43 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_005054.2598277.p0 Protein 2e-41 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_014475.1.orf0.gen Protein 2e-41 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator BAC0197 Protein 3e-32 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator FJ349556.1.orf0.gene Protein 6e-41 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator EU250284.1.orf4.gene Protein 2e-35 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP001138.1.gene2239. Protein 8e-38 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP001918.1.gene3444. Protein 2e-36 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP000034.1.gene2186. Protein 3e-37 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002695.1.916589.p Protein 3e-37 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator BAC0596 Protein 8e-38 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator BAC0039 Protein 3e-37 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 4e-28 43
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP000647.1.gene2531. Protein 4e-37 42
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP001138.1.gene4273. Protein 1e-30 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_002695.1.915041.p Protein 9e-31 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator BAC0533 Protein 6e-31 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 4e-33 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP000034.1.gene3834. Protein 9e-31 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 6e-31 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 6e-45 41
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator NC_008702.1.4607594. Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-31 48
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG1563 Protein 6e-45 47
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG1702 Protein 5e-44 46
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-29 42
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-34 42
Desku_1201 YP_004516585.1 winged helix family two component transcriptional regulator VFG1386 Protein 3e-30 41