Gene Information

Name : Metme_0812 (Metme_0812)
Accession : YP_004511751.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 873993 - 874721 bp
Length : 729 bp
Strand : -
Note : KEGG: vap:Vapar_2988 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver r

DNA sequence : 
ATGATACTAACGCCAAAACGCAGCATCCTGGTAATTGAGGACGACCCCGACATTTCAGCCCTGGTGGCCGCCAATCTGCG
CGACGAAGGCTATACCGTGGAAACAGCTGCCGACGGCGCGGCCGGACTGGCCAAATTGACTACAGCGGCTTACGATGCGG
TGATACTCGATCTGGTGCTACCCGGCATCGACGGTCTGGAAATCTGCCGCAGGGTGCGCGCCCTGCCTCACTATACCCCG
ATTATCATCATCAGCTCAAAATCGGCGGAAGCGCAACGAATCGTCGGTCTGGAAATGGGGGCGGACGATTATCTCTGCAA
ACCTTTTTCCGTGCTGGAATTGATCGCCCGCGTCCGCGCACTGCTGCGGCGAGTGGACGCCTTAAAACATAAGGTCCCGG
ATGACACCGGCGCCCTTTTGATTGGCACGCATCTGCGCATGGATACGCAAACCCGTAGCGTATACCTGGACGAACGTCCG
GTCTCGCTGACTATGCGCGAGTTTGAATTACTGCATTTTTTTGTGCGCCATCCTAACCGCATTTTCACCCGCATGGAATT
ATTGGATCAAGTGTGGGGATACGCACACGACGGATACGAGCACACCGTCAATTCCCATATCAACCGTTTACGGGCCAAAA
TAGAGTCGGACCCGGCCAATCCGCAATTGATCCTGACGGTATGGGGCATGGGGTACAAGTTCTCGCCGATCACCTCCCCA
CCCGCCTGA

Protein sequence : 
MILTPKRSILVIEDDPDISALVAANLRDEGYTVETAADGAAGLAKLTTAAYDAVILDLVLPGIDGLEICRRVRALPHYTP
IIIISSKSAEAQRIVGLEMGADDYLCKPFSVLELIARVRALLRRVDALKHKVPDDTGALLIGTHLRMDTQTRSVYLDERP
VSLTMREFELLHFFVRHPNRIFTRMELLDQVWGYAHDGYEHTVNSHINRLRAKIESDPANPQLILTVWGMGYKFSPITSP
PA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-50 55
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-50 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_0812 YP_004511751.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-34 42
Metme_0812 YP_004511751.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 7e-38 42
Metme_0812 YP_004511751.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_0812 YP_004511751.1 winged helix family two component transcriptional regulator VFG1563 Protein 4e-50 55
Metme_0812 YP_004511751.1 winged helix family two component transcriptional regulator VFG1702 Protein 9e-51 54