Gene Information

Name : Metme_4070 (Metme_4070)
Accession : YP_004514922.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4491756 - 4492511 bp
Length : 756 bp
Strand : -
Note : KEGG: alv:Alvin_2932 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence :

ATGTATAACAAGCAGTTGGTGTTCGGCGGATTGGCAGTCTTACTAATAGTGATGCCCGAAATTGCCGGCGCGGCGATTCC
GGGCATCGATGCCATTACCGTAACCACCAATCCCAAGGGTGGCGAAACCTATACGGTTACGATCCAGATTTTAGCGATCA
TGACCATGCTGACCTTGCTGCCGGCATTGTTATTGACCATGACGTCCTTTACCCGCATTATGATTGTGCTGGGTTTGTTA
AGACAGGCTTTGGGGGCGCAACAAGCCCCCAGTAATCAGGTATTGCTGGGTTTGTCGTTGTTTTTGACGATCTTCATCAT
GATGCCTGTTTTGGAGAAGGTCAACGATACCGCGGTACAGCCCTATCTGGAAGAAAAAATGGATGCCGTTACCGCGCTGC
AAGCCGCATCAGAGCCTTTAAAACAATTTATGCTCAAGCAAACCCGTGAAAGCGATATTGATATGTTCGTCAGAATCTCG
GGCAAGGAGCAGATTAACAAGCCTGAAGACGTGCCTTTTTCTTTGCTTCTCCCAGCGTATGTTACCAGCGAATTAAAGAC
AGCCTTTCAGATCGGTTTTTTGGTGTTTCTGCCGTTTTTGGTGATTGATTTGGTGGTGGCCAGCGTACTGATGTCGATGG
GGATGATGATGCTGTCCCCCATGATAGTATCGCTGCCGTTTAAGATTATGCTGTTTGTGTTGGCGGACGGATGGTCTTTG
GTGCTGGAGATGCTGGCGGCCAGTTTTTATGTCTAA

Protein sequence :

MYNKQLVFGGLAVLLIVMPEIAGAAIPGIDAITVTTNPKGGETYTVTIQILAIMTMLTLLPALLLTMTSFTRIMIVLGLL
RQALGAQQAPSNQVLLGLSLFLTIFIMMPVLEKVNDTAVQPYLEEKMDAVTALQAASEPLKQFMLKQTRESDIDMFVRIS
GKEQINKPEDVPFSLLLPAYVTSELKTAFQIGFLVFLPFLVIDLVVASVLMSMGMMMLSPMIVSLPFKIMLFVLADGWSL
VLEMLAASFYV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	AAP34349.1	HrcR	Virulence	Hrp PAI	Protein	2e-18	44
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	7e-19	44
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	7e-19	44
hrcR	NP_640757.1	type III secretion system protein	Virulence	Hrp PAI	Protein	3e-18	44
hrcR	AAD21321.1	HrcR	Virulence	Hrp PAI	Protein	2e-18	44
hrcR	YP_362153.1	type III secretion system protein	Virulence	Hrp PAI	Protein	3e-18	44
hrcR	BAB07862.1	HrcR	Virulence	Hrp PAI	Protein	1e-17	43
hrcR	YP_198720.1	type III secretion system protein	Virulence	Hrp PAI	Protein	1e-17	43
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	2e-17	42
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	2e-17	42
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	2e-17	42
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	7e-17	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	1e-14	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	1e-14	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	1e-14	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	1e-14	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	2e-14	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	1e-14	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	2e-14	41
escR	AAC38369.1	EscR	Virulence	LEE	Protein	7e-14	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	1e-14	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	1e-14	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	1e-14	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	1e-14	41
unnamed	AAL06354.1	EscR	Virulence	LEE	Protein	2e-14	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG1259	Protein	4e-44	64
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG2338	Protein	3e-39	63
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG2494	Protein	3e-39	59
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG2016	Protein	6e-39	58
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG0715	Protein	4e-14	41
Metme_4070	YP_004514922.1	flagellar biosynthetic protein FliP	VFG0827	Protein	6e-15	41