Gene Information

Name : Metme_2014 (Metme_2014)
Accession : YP_004512923.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Unknown
Product : conjugative coupling factor TraD
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3451
EC number : -
Position : 2209094 - 2211148 bp
Length : 2055 bp
Strand : +
Note : TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: noc:Noc_0632 hypothetical protein

DNA sequence :
ATGAAGTCCCAGTATCCGGTCGAAGCCTTGCTGCGGCCGCCGGTCGAACTGTGGTCGGCGGTTTGTGCCTTCGCTTGTGC
GTTGCTGGCCGGCCTGGCGCCGTGGGCTATCATGATGACGCCATCGGTGGGTTATGCCACGGCTGGCTTATTGACGCTGC
TCGGTTTGGCTAGAACCCGGCAAGCGTTATTCGTCTTGCGCTATCAACGCAACATGCGCAAGCTGCCACGTTATGAAATC
GCAGCCCAAGACATTCCGGTCAGCCGCCAGCGTTTGTTTTTGGGTAAAGGCTTTTTGTGGCAGCAAAAACACACCCAACG
GTTGCGCGATACCTTGCATCCTAAGGTGCGGCGCTATATCGAACCGTCCTTTGCCTATCAACTGGCCCGGCGTTTGGAGC
GCCGCTGGGAATCATCGCCAACGTTGCAGCCGTTGACCAAACTGATGCAAAGCCCAGCCTGGTGGAACCCGGTCGCGCCG
TTACCGCCGGTCGGCGGCAAACCGCAGATTCATGCGGTGGAACTCGAAGAACAGCCGGTCAGTATGGATTTGCGCGAACG
GGTCGGGCATACCCTGGTGCTGGGCACTACCCGGGTCGGCAAAACCCGGCTGGCCGAACTCTTGATCACGCAGGATATCG
CCCGCGGCGATACCGTGATCGTGTTCGATCCGAAAGGCGATGCCGATCTGATGAAACGCATGGTCGCAGAAGCCAAACGC
GCCGGTCGCAGTCGGCATCTGTATCTCTTCCATCTGGGCTATCCGGAGATTTCCAGCCGCTATAACGCCATCGGCAATTT
CTCCCGCATCACCGAAGTCGCCACCCGCTTGACCAACCCCTTGCCCAGCACTGGCAATTCGGCGGCGTTCCGTGAATTCG
CCTGGCGCTTTACCAATATGATCGCCGTGGCGCTGGTCAAAATGGGCAAACGCCCGGATTATAAATTGATCACCCGCTAC
ATCACCCATATCGAGCCACTGTTGACCGAATACTACCGGCAATGGCTGCCCGACGTGGCGCCGCCGGACTGGGAACAACA
GGTACAGCGCATAGCCGCTTCCATCAACGAACGCGATTTACCCTTTGCGCTAAAAGGCCGATCGCCGGAAGTGATTGCCC
TGGTACGCTATGTCAAAGACAATGGCTTTTACGATGCCGTCGCCGATGGCCTGCGGTCGGCGTTCGAATACGACAAGACC
TATTTCGATAAAATCGTCGCATCCTTATTGCCGTTGATGGAAAAACTGATTACCGGCAAAACCGCGGCGCTGATCTCGCC
GGACTACACCGACATCGCCGACACTCGGCCCATCATCGACTGGCGGCAAATCATTCGCCGTCAAGGCATCGTCTATGTCG
GGCTGGATGCCTTATCGGATATGGCGGTAGCATCCGCAGTCGGCAATTCCATGTTTGCCGATCTGGTCTCCGTTTCCGGC
GAAATCTACAAACACGGCACCGACCACGGTCTGCCGGATGCGGTAAAAACCCATGAGCTGCCGACGATTTCCTTGCATGC
CGACGAATTCAACGAATTGATCGGCGACGAGTTTATTCCCTTGCTCAACAAGGCCGGCGGCTCGGGGTTTCAAGTCACGG
CCTATACCCAAACCTGGTCGGATGTGGAAGCCCGCATCGGCAACAAGGCCAAAGCCGGGCAGGTGGCCGGCAACTTCAAT
ACCCTGATCATGCTGCGGGTCAAAGAACTGGCCACCGCCGAAATGCTCACCAACCAAATCGACACCTGTAACATCAGCAC
GCTGATGGAAGTATCCGGCGTCAACGATTCGGCCGATCCCAATTCCCCCATCGATTTTACCTCGCAAAACCAGGACCGCA
TTTCCGTCACCGAAATGCCGATGATTTCACCGGCCACCGTGATGGCCTTACCCAAAGGCCAGGCCTTCGCCTTGCTGGAA
GGCGGCAATCTGTGGAAAATTCGCATCCCGTTGCCAACTAAAGCCAACGATGCGCTGTTGCCGAAAAACCTGCAGGAGGT
GGCCCATGAAATGCAGCGCCGCTATCTGACCAACGACCACTGGTGGGCAGGCTGA

Protein sequence :
MKSQYPVEALLRPPVELWSAVCAFACALLAGLAPWAIMMTPSVGYATAGLLTLLGLARTRQALFVLRYQRNMRKLPRYEI
AAQDIPVSRQRLFLGKGFLWQQKHTQRLRDTLHPKVRRYIEPSFAYQLARRLERRWESSPTLQPLTKLMQSPAWWNPVAP
LPPVGGKPQIHAVELEEQPVSMDLRERVGHTLVLGTTRVGKTRLAELLITQDIARGDTVIVFDPKGDADLMKRMVAEAKR
AGRSRHLYLFHLGYPEISSRYNAIGNFSRITEVATRLTNPLPSTGNSAAFREFAWRFTNMIAVALVKMGKRPDYKLITRY
ITHIEPLLTEYYRQWLPDVAPPDWEQQVQRIAASINERDLPFALKGRSPEVIALVRYVKDNGFYDAVADGLRSAFEYDKT
YFDKIVASLLPLMEKLITGKTAALISPDYTDIADTRPIIDWRQIIRRQGIVYVGLDALSDMAVASAVGNSMFADLVSVSG
EIYKHGTDHGLPDAVKTHELPTISLHADEFNELIGDEFIPLLNKAGGSGFQVTAYTQTWSDVEARIGNKAKAGQVAGNFN
TLIMLRVKELATAEMLTNQIDTCNISTLMEVSGVNDSADPNSPIDFTSQNQDRISVTEMPMISPATVMALPKGQAFALLE
GGNLWKIRIPLPTKANDALLPKNLQEVAHEMQRRYLTNDHWWAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2588 YP_002152307.1 plasmid transfer protein Not tested Not named Protein 4e-178 59
STY4562 NP_458648.1 hypothetical protein Not tested SPI-7 Protein 0.0 58
t4260 NP_807858.1 hypothetical protein Not tested SPI-7 Protein 0.0 58
ORF SG68 AAN62290.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 0.0 58
ORF C65 AAN62159.1 conserved hypothetical protein Not tested PAGI-2(C) Protein 0.0 58
api27 CAF28501.1 hypothetical protein Not tested YAPI Protein 2e-172 57
YpsIP31758_3718 YP_001402672.1 hypothetical protein Not tested YAPI Protein 3e-174 57
YE3493 YP_001007651.1 TraG-family protein Not tested YAPI Protein 2e-174 57
traG CAI36113.1 putative TraG family conjugative protein Not tested PPHGI-1 Protein 4e-170 55
EXA47 ABD94656.1 TraG/TraD family protein Not tested ExoU island A Protein 6e-175 54
unnamed ABR13375.1 hypothetical protein Not tested PAGI-5 Protein 5e-175 54
RL047 AAP84173.1 conserved hypothetical protein Not tested PAPI-1 Protein 3e-176 54
Pmu_03190 YP_005176218.1 conjugal transfer protein TraD Not tested ICEPmu1 Protein 2e-169 52
traD AAW83057.1 TraD Not tested GGI Protein 2e-145 51