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Name : Metme_2014 (Metme_2014) Accession : YP_004512923.1 Strain : Methylomonas methanica MC09 Genome accession: NC_015572 Putative virulence/resistance : Unknown Product : conjugative coupling factor TraD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 2209094 - 2211148 bp Length : 2055 bp Strand : + Note : TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: noc:Noc_0632 hypothetical protein DNA sequence : ATGAAGTCCCAGTATCCGGTCGAAGCCTTGCTGCGGCCGCCGGTCGAACTGTGGTCGGCGGTTTGTGCCTTCGCTTGTGC GTTGCTGGCCGGCCTGGCGCCGTGGGCTATCATGATGACGCCATCGGTGGGTTATGCCACGGCTGGCTTATTGACGCTGC TCGGTTTGGCTAGAACCCGGCAAGCGTTATTCGTCTTGCGCTATCAACGCAACATGCGCAAGCTGCCACGTTATGAAATC GCAGCCCAAGACATTCCGGTCAGCCGCCAGCGTTTGTTTTTGGGTAAAGGCTTTTTGTGGCAGCAAAAACACACCCAACG GTTGCGCGATACCTTGCATCCTAAGGTGCGGCGCTATATCGAACCGTCCTTTGCCTATCAACTGGCCCGGCGTTTGGAGC GCCGCTGGGAATCATCGCCAACGTTGCAGCCGTTGACCAAACTGATGCAAAGCCCAGCCTGGTGGAACCCGGTCGCGCCG TTACCGCCGGTCGGCGGCAAACCGCAGATTCATGCGGTGGAACTCGAAGAACAGCCGGTCAGTATGGATTTGCGCGAACG GGTCGGGCATACCCTGGTGCTGGGCACTACCCGGGTCGGCAAAACCCGGCTGGCCGAACTCTTGATCACGCAGGATATCG CCCGCGGCGATACCGTGATCGTGTTCGATCCGAAAGGCGATGCCGATCTGATGAAACGCATGGTCGCAGAAGCCAAACGC GCCGGTCGCAGTCGGCATCTGTATCTCTTCCATCTGGGCTATCCGGAGATTTCCAGCCGCTATAACGCCATCGGCAATTT CTCCCGCATCACCGAAGTCGCCACCCGCTTGACCAACCCCTTGCCCAGCACTGGCAATTCGGCGGCGTTCCGTGAATTCG CCTGGCGCTTTACCAATATGATCGCCGTGGCGCTGGTCAAAATGGGCAAACGCCCGGATTATAAATTGATCACCCGCTAC ATCACCCATATCGAGCCACTGTTGACCGAATACTACCGGCAATGGCTGCCCGACGTGGCGCCGCCGGACTGGGAACAACA GGTACAGCGCATAGCCGCTTCCATCAACGAACGCGATTTACCCTTTGCGCTAAAAGGCCGATCGCCGGAAGTGATTGCCC TGGTACGCTATGTCAAAGACAATGGCTTTTACGATGCCGTCGCCGATGGCCTGCGGTCGGCGTTCGAATACGACAAGACC TATTTCGATAAAATCGTCGCATCCTTATTGCCGTTGATGGAAAAACTGATTACCGGCAAAACCGCGGCGCTGATCTCGCC GGACTACACCGACATCGCCGACACTCGGCCCATCATCGACTGGCGGCAAATCATTCGCCGTCAAGGCATCGTCTATGTCG GGCTGGATGCCTTATCGGATATGGCGGTAGCATCCGCAGTCGGCAATTCCATGTTTGCCGATCTGGTCTCCGTTTCCGGC GAAATCTACAAACACGGCACCGACCACGGTCTGCCGGATGCGGTAAAAACCCATGAGCTGCCGACGATTTCCTTGCATGC CGACGAATTCAACGAATTGATCGGCGACGAGTTTATTCCCTTGCTCAACAAGGCCGGCGGCTCGGGGTTTCAAGTCACGG CCTATACCCAAACCTGGTCGGATGTGGAAGCCCGCATCGGCAACAAGGCCAAAGCCGGGCAGGTGGCCGGCAACTTCAAT ACCCTGATCATGCTGCGGGTCAAAGAACTGGCCACCGCCGAAATGCTCACCAACCAAATCGACACCTGTAACATCAGCAC GCTGATGGAAGTATCCGGCGTCAACGATTCGGCCGATCCCAATTCCCCCATCGATTTTACCTCGCAAAACCAGGACCGCA TTTCCGTCACCGAAATGCCGATGATTTCACCGGCCACCGTGATGGCCTTACCCAAAGGCCAGGCCTTCGCCTTGCTGGAA GGCGGCAATCTGTGGAAAATTCGCATCCCGTTGCCAACTAAAGCCAACGATGCGCTGTTGCCGAAAAACCTGCAGGAGGT GGCCCATGAAATGCAGCGCCGCTATCTGACCAACGACCACTGGTGGGCAGGCTGA Protein sequence : MKSQYPVEALLRPPVELWSAVCAFACALLAGLAPWAIMMTPSVGYATAGLLTLLGLARTRQALFVLRYQRNMRKLPRYEI AAQDIPVSRQRLFLGKGFLWQQKHTQRLRDTLHPKVRRYIEPSFAYQLARRLERRWESSPTLQPLTKLMQSPAWWNPVAP LPPVGGKPQIHAVELEEQPVSMDLRERVGHTLVLGTTRVGKTRLAELLITQDIARGDTVIVFDPKGDADLMKRMVAEAKR AGRSRHLYLFHLGYPEISSRYNAIGNFSRITEVATRLTNPLPSTGNSAAFREFAWRFTNMIAVALVKMGKRPDYKLITRY ITHIEPLLTEYYRQWLPDVAPPDWEQQVQRIAASINERDLPFALKGRSPEVIALVRYVKDNGFYDAVADGLRSAFEYDKT YFDKIVASLLPLMEKLITGKTAALISPDYTDIADTRPIIDWRQIIRRQGIVYVGLDALSDMAVASAVGNSMFADLVSVSG EIYKHGTDHGLPDAVKTHELPTISLHADEFNELIGDEFIPLLNKAGGSGFQVTAYTQTWSDVEARIGNKAKAGQVAGNFN TLIMLRVKELATAEMLTNQIDTCNISTLMEVSGVNDSADPNSPIDFTSQNQDRISVTEMPMISPATVMALPKGQAFALLE GGNLWKIRIPLPTKANDALLPKNLQEVAHEMQRRYLTNDHWWAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 4e-178 | 59 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 58 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 58 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 58 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 58 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 2e-172 | 57 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 3e-174 | 57 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 2e-174 | 57 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 4e-170 | 55 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 6e-175 | 54 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 5e-175 | 54 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 3e-176 | 54 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 2e-169 | 52 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 2e-145 | 51 |
