Gene Information

Name : Metme_1958 (Metme_1958)
Accession : YP_004512870.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2151545 - 2152447 bp
Length : 903 bp
Strand : +
Note : PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_A0089 ISPsy21, transposase orfB

DNA sequence : 
ATGAACGCCTTTATCGATGAACATCGCAAGGCTTATGGGGTCGAGCCAATCTGCAAAGTATTGCCGATTGCCCCATCGAC
GTATTATCGGCATGCGGCACGCACCGCCAATCCTGAATTGCGCTCAACTCGCGCCAAGCAGGACGAGGCACTCTGCCAGG
AGATTCGCCGAGTTTGGGACGAAAGCTTCCAAAACTACGGCGCTCGTAAAGTTTGGATTCAGTTGAAGCGCGAAGGCTTG
ACGGTGGCCCGTTGTACCGTGGAGCGCCTGATGAAAAATCTGGGGCTTAAAGGCGTCAGGCGTGGCAAAACCATCAAGAC
CACGATCAGCGACGCCGATGCAGTATGCCCCTTGGATCGCGTGAACCGCCAATTCAATGCCGAGCGACCGAATGCTTTGT
GGGTGGCGGATTTTACCTATGTCAAAACCTGGCAAGGCTTCGTCTATGTGGCTTTCGTTGTCGATGTGTTTGCCCGTTAC
ATTGTCGGCTGGAAAGTCTCGTCCTCGGCGCATACCGATTTTGTATTGGATGCGCTGGAACAGGCGCTGCATGACCGGCA
GCCCCAGCGAGACGGAAGCCTGATTCACCATAGCGATCGAGGGGTGCAGTACGTTTCGATCCGCTATACCGAACGACTGT
CAGAAGCCGGCGTTGAGGCTTCGGTGGGCAGTGTGGGCGACTCTTATGACAATGCCCTGGCTGAAACCATCAATGGCTTG
TATAAGGCCGAGCTGATTCATAAACAATCTTGGAAGAATCGCGAAGCCGTCGAACTCGCCACCTTGACCTGGGTTGACTG
GTTTAACCATCAACGCTTGCTAGGACCGATTGGTAATATTCCGCCAGCCGAAGCCGAGGCCATGTATTATCAACAACTTT
CCGAGTCCGCTAAGGCAGCATGA

Protein sequence : 
MNAFIDEHRKAYGVEPICKVLPIAPSTYYRHAARTANPELRSTRAKQDEALCQEIRRVWDESFQNYGARKVWIQLKREGL
TVARCTVERLMKNLGLKGVRRGKTIKTTISDADAVCPLDRVNRQFNAERPNALWVADFTYVKTWQGFVYVAFVVDVFARY
IVGWKVSSSAHTDFVLDALEQALHDRQPQRDGSLIHHSDRGVQYVSIRYTERLSEAGVEASVGSVGDSYDNALAETINGL
YKAELIHKQSWKNREAVELATLTWVDWFNHQRLLGPIGNIPPAEAEAMYYQQLSESAKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 9e-59 69
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-58 68
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-65 67
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-78 64
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-74 64
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-78 64
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-76 64
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-76 64
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-74 63
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-74 63
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-74 63
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-77 63
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-76 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-74 63
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-74 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-74 63
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-75 63
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-75 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-76 63
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-73 62
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-50 62
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 1e-45 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-36 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_1958 YP_004512870.1 integrase catalytic subunit VFG1602 Protein 6e-74 62