Gene Information

Name : Metme_1559 (Metme_1559)
Accession : YP_004512478.1
Strain : Methylomonas methanica MC09
Genome accession: NC_015572
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 1707846 - 1708829 bp
Length : 984 bp
Strand : +
Note : KEGG: slt:Slit_0377 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage

DNA sequence : 
ATGCAAAATCCATCAAACAATCCGCCTAAGTTGTTGGATCAAGTGCGCGATAAAATCCGTTTGAAGCATTACAGCATCCG
TACCGAACAGGCGTATACGGATTGGATTAAACGTTATATTTTGTATTTTGGCAAGCGCCATCCCCGCGACATGGGCGCTA
GTGAGGTGGAGCGGTTTTTGACTCATTTGGCAGTCGAGGGTAAGGTGGCGGCATCAACGCAAAATCAGGCCAAAGCCGCC
TTGCTGTTTCTGTATAAGGAAGTATTAACGATTGAATTGCCTTGGTTGGATAACGTTGAGCAAGCCAAGGCCCCCAAACG
CTTGCCGGTGGTGTTAAATCGTGACGAAATCCAGGCGATTTTATTGCGTTTGAGTGGTACGCCGCATCTGATTGCCAGCC
TGTTGTACGGTACCGGAATGCGGATTATGGAATGTCTGCGACTAAGGGTGCAGGATGTCGATTTCAAGCGCCGCGAGATT
TTGATACGCGACGGCAAGGGCGCCAAGGACAGAGTGACGGTGTTGCCTGCGTCGTTGACGCCTGCACTGCAAGCGCATTT
AAGCAAAGTCAGGGAATTGCATGTAACCGATCTGGCTCAAGGCTACGGTGCCGTGTATTTGCCCCATGCATTGGCACGTA
AATACCCAAATGCAGCCAGGGAATGGATTTGGCAGTATGTGTTTCCGGCTCCCAGACTATCCACCGATCCGCGCAGCGGC
GAGGTGCGGCGCCATCACATTCAGGAGCAGGCGATACAACGTGCCGTTAAACAGGCGGCTCGGGATGCTGATTTAAACAA
GGCTGCGACACCGCATACTTTTCGCCATTCGTTTGCCACGCATTTGCTGGAAAGCGGCTACGATATCCGCACCGTGCAGG
AATTGCTCGGACATGCGGATGTCAGTACTACAATGATTTACACACACGTCCTCAACAAAGGCGGCAAGGGTGTCACCAGC
CCCTTGGATGGTTTAATGCTTTGA

Protein sequence : 
MQNPSNNPPKLLDQVRDKIRLKHYSIRTEQAYTDWIKRYILYFGKRHPRDMGASEVERFLTHLAVEGKVAASTQNQAKAA
LLFLYKEVLTIELPWLDNVEQAKAPKRLPVVLNRDEIQAILLRLSGTPHLIASLLYGTGMRIMECLRLRVQDVDFKRREI
LIRDGKGAKDRVTVLPASLTPALQAHLSKVRELHVTDLAQGYGAVYLPHALARKYPNAAREWIWQYVFPAPRLSTDPRSG
EVRRHHIQEQAIQRAVKQAARDADLNKAATPHTFRHSFATHLLESGYDIRTVQELLGHADVSTTMIYTHVLNKGGKGVTS
PLDGLML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 1e-67 58
int1 YP_005160012.1 integrase Not tested Not named Protein 7e-73 58
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 7e-87 57
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 3e-86 57
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 9e-87 57
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 4e-87 57
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 7e-87 57
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 3e-86 57
intI YP_001844881.1 integrase Not tested AbaR20 Protein 5e-87 57
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 4e-87 57
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 3e-86 57
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 5e-87 57
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 4e-87 57
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 3e-86 57
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 5e-87 57
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 3e-86 57
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 3e-86 57
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 5e-87 57
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 3e-86 57
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 4e-87 57
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-86 57
intI1 AAK02045.1 integrase Not tested SGI1 Protein 3e-86 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Metme_1559 YP_004512478.1 integron integrase VFG1028 Protein 1e-86 57