Gene Information

Name : kdsB (PGTDC60_0076)
Accession : YP_004508812.1
Strain : Porphyromonas gingivalis TDC60
Genome accession: NC_015571
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : -
Position : 92264 - 93028 bp
Length : 765 bp
Strand : +
Note : similar to RefSeq{20100916}, gi|34541435|ref|NP_905914.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Porphyromonas gingivalis W83]|, percent identity 100 in 254 aa, BLASTP E(): 1e-148

DNA sequence : 
ATGAATACAGAGGTAATAGCCATCATTCCGGCTCGATTTGCTTCCAGCCGATTCCCGGGCAAGCCACTGGCCGATATGCT
TGGCAAGTCTATGATCCAACGGGTACATGAGCGAATAGTCGGTGTCGTCCCCCGGGCCGTCGTAGCCACCGATGACGAAC
GTATCCGTCAGGCCGTGGAGGACTTCGGAGGAGAGGTGGTGATGACGTCCCCAGAGTGCAGTAGTGGTACAGAACGCTGT
CGGGAGGCATTCGACAAAGTAGGTCGGGGAGAAAAGATCGTCCTGAATCTGCAAGGCGATGAACCTTTTATCCAAAAGGA
ACAGATCGATCTGCTGATTTCGGCCTTCGACAAACCAGAAACCGATATAGCTACGTTAGCAGAAGTTTTCTCGTCTGACG
TAAGCTTCGAGCGTTTGAACAATCCAAACAGCCCGAAGATCGTATTGGATCATGGAGGCTATGCCCTTTATTTCAGCCGC
TCCGTTATCCCATATCTCAGGGGGGTACAGCCTGACTCTTGGTGCCGTCGGCATACTTACTACAAGCATATCGGGATCTA
TGCCTTTCGCCCGACCGTCCTCCGCAAGATAACCTCACTGCCACAAAGTACGGCAGAGCAAGCCGAAAGTCTCGAACAGC
TTCGCTGGCTGGAATACGGCTATCGGATTCGAGTGCTGCAAACACAGCAGAGTACGATAGGAATCGATACGCCGGAGGAT
ATGGAGAAGGCCATAGCCTATCTCCGTTCGCAGGGAATGGAATGA

Protein sequence : 
MNTEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHERIVGVVPRAVVATDDERIRQAVEDFGGEVVMTSPECSSGTERC
REAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFDKPETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSR
SVIPYLRGVQPDSWCRRHTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQTQQSTIGIDTPED
MEKAIAYLRSQGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 2e-38 44
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 1e-38 44
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 1e-38 44