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Name : lysS (PGTDC60_2098) Accession : YP_004510805.1 Strain : Porphyromonas gingivalis TDC60 Genome accession: NC_015571 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2178579 - 2180315 bp Length : 1737 bp Strand : + Note : similar to RefSeq{20100916}, gi|188995021|ref|YP_001929273.1| lysyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]|, percent identity 98.8 in 578 aa, BLASTP E(): 0 DNA sequence : ATGAACATACTCGAACTTTCGGAACAAGAAGTCGTACGCCGTAACAGCTTAGAGCAACTGCGTAATTTGGGGATCGATCC ATATCCTGCAGCGGAATATACCGTCAATGCCTATTCCGCCGAGATCAAAAGGAATTTCAATGGCGATGAGAATGTCGCCA AACGTCAAGTAAGCATTGCCGGACGTATTATGAGCCGCCGTATCATGGGGAAAGCTACATTCATGGAGCTGCAAGATGCT GAGGGGCGTATCCAGATCTATATTACTCGGGACGATATTTGTCCGGGTGAGGATAAGGAGTTCTACAATACAGTGGTCAA GAAGTGTACGGATATAGGTGATTTCATCGGAGTGAAAGGGTACGTATTCCGCACTCAGATGGGAGAAATATCGGTGCATG TGCAGGAGATGACTTTCTTGTCGAAAGCTATCCGCCCCCTTCCTGTGGTAAAAGAAAAAGATGGGGAGGTCTTCGATGGC TTCACGGATCCGGAGCAGCGTTATCGTCAGCGATACGTGGATCTGGTCGTCAATAGTCATGTCAAAGACATTTTCCTCAA GCGTACGATGGTATTTAATTCGATGCGCAGTTTCTTCAATGAGCGCGGATACATCGAAGTGGATACACCCGTACTCCAAT CGATCCCGGGAGGTGCAGCTGCGCGTCCTTTTATCACGCATCATAACGCTCTGGACATTCCGCTCTATCTGAGAATCGCT AACGAGTTGTATCTGAAGCGTCTGATCGTGGGCGGTTTCGATGGTGTGTATGAATTCAGCCGCAATTTCCGAAATGAGGG GATGGACCGCACGCATAATCCTGAGTTCACGGCCATGGAGATCTATGTGGCGTATAAGGATTACAACTGGATGATGAACT TTACGGAGCAGATGCTCGAACGCATCTGTATGGATGTGCTGGGTACTACTCAGGTGAAGGTGGGCGAGAAATTGATCGAC TTCAAGGCCCCCTACAAGCGAGTGACCATGATCGAAGCCATCCATGAGCATACGGGTATCGACATCAGCGGAAAGAACGA GGCCGAGCTGCGTCAGGTATGCGACAAGCTGGGCGTAGAGCACAATGAAACGATGGGCAAAGGCAAGCTCATCGATGAGA TCTTCGGCGAGAAGTGCGAGAAGAACTATATCCAGCCTACTTTCATCACAGACTATCCGAAAGAAATGTCGCCTCTGACG AAGGAGCACCGCACCAATCCGGAGCTGACAGAGCGATTCGAGCTGATGGTCAATGGCAAGGAGTTGGCCAACGCCTACTC GGAGCTGAACGACCCGATTGATCAGAGAGAACGTTTCGAAGAACAACTTAAGCTGTCCGAGAAAGGCGATGACGAAGCCA TGTACATCGACAACGACTTCATCCGTGCCCTTGAATACGGTATGCCGCCGACCAGCGGTATGGGTATCGGTATGGACCGT TTGGTCATGCTATTGACAGGGCAGGAGAGTATTCAGGAGGTGCTCCTCTTCCCACAGATGAAGCCCGAGAAGGTGGCTCC ACGAGATACGAAAGAGAAGTTCGCCGTTTGTGGCGTTCCCGAAGAGTGGGTACCTGTACTGCATAAGGCCGGCTATCTTA CCGTACAGTTGATGCGAGAGGATAAACCGGGCAAGGTGATGCAGCAGCTAATGGACATCAATAAGAAATATAAGTTGGGG CTTGCCGGTTTGAATCTGGAAACTGTTTCGGCTTGGCAGGAAGCCCCATATGAGTAA Protein sequence : MNILELSEQEVVRRNSLEQLRNLGIDPYPAAEYTVNAYSAEIKRNFNGDENVAKRQVSIAGRIMSRRIMGKATFMELQDA EGRIQIYITRDDICPGEDKEFYNTVVKKCTDIGDFIGVKGYVFRTQMGEISVHVQEMTFLSKAIRPLPVVKEKDGEVFDG FTDPEQRYRQRYVDLVVNSHVKDIFLKRTMVFNSMRSFFNERGYIEVDTPVLQSIPGGAAARPFITHHNALDIPLYLRIA NELYLKRLIVGGFDGVYEFSRNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMNFTEQMLERICMDVLGTTQVKVGEKLID FKAPYKRVTMIEAIHEHTGIDISGKNEAELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLT KEHRTNPELTERFELMVNGKELANAYSELNDPIDQRERFEEQLKLSEKGDDEAMYIDNDFIRALEYGMPPTSGMGIGMDR LVMLLTGQESIQEVLLFPQMKPEKVAPRDTKEKFAVCGVPEEWVPVLHKAGYLTVQLMREDKPGKVMQQLMDINKKYKLG LAGLNLETVSAWQEAPYE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-107 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004510805.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-107 | 46 |
