|
Name : serS (PGTDC60_1436) Accession : YP_004510151.1 Strain : Porphyromonas gingivalis TDC60 Genome accession: NC_015571 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1486715 - 1487986 bp Length : 1272 bp Strand : + Note : similar to RefSeq{20100916}, gi|188995510|ref|YP_001929762.1| seryl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]|, percent identity 98.8 in 423 aa, BLASTP E(): 0 DNA sequence : ATGCTGACACTCAAGCAAATCATAGAAAACAAGGAAGAAGTGATCCGTCGCTTGGCGGTGAAGCACTTCGATGCAGCTGC TATTCTCGACGAAGTCATCTCTCTCGACAGACAGCGACGCGAAACTCAACAGAGCCTGGATGCTCGCTTGGCGGAGCAAA ACGCCATTGCCAAGGAGATCGGAGCTTTGATGAAAGCCGGCAAGAAAGGCGAGGCAGAGGCCATCCGTACGAAAGTAGCC GATATGAAAGCCGAGAGCCACCATCTGGAAGAGCGGAAAGCTGATCTGGAGAATGCTATACGCCAACAGCTTCTGCTTAT CCCGAATCTGCCGCATGAGTCTGTCCCTGCAGGCAAGACCGCAGAGGAGAATGTCTGTGTGAAGACAGGCGGCACAGTGC CGGAGCTTGGAGCGCACAAGCTCCCACATTGGGATCTGGCCAAGAAATACGATCTGATCGACTTCGAACTCGGCGTCAAG ATAACCGGAGCAGGCTTCCCCGTCTATAAGGGCAAAGGAGCACGCCTGCAGCGAGCTTTGATCAACTTCTTCTTGGATGA AGCCCGTAACGCCGGCTTCACTGAGATAGAGCCGCCCTATGTGGTCAATGAGGACTCCGGCTACGGTACGGGACAGCTCC CCGACAAGGAAGGGCAGATGTACCATGTCACGGTGGACAACCTGTATCTGATCCCCACGGCAGAGGTGCCGGTGACCAAT ATCTTTCGCGATGTGATTCTCTCCGAGGACGAATTGCCCATTCGTCTGACCGCTTATTCGGCTTGCTTCCGACGCGAAGC CGGTTCGTACGGCAAGGATGTTCGCGGTCTGAACCGCCTCCATCAGTTCAATAAGGTGGAGATCGTCTGTATCGACAAGC CCGAACACTCCTACGAACAGCTCGATCATATGGTCGGCTATGTCCAAGGCCTTGTAGATAAGTTGGGACTTCCGTGGCGT ATCCTTCGCCTCTGCGGCGGAGATATCAGCTTCACTTCGGCATTGACTTACGACTTCGAAGTCTATTCGGCTGCCCAAGA GCGGTGGTTGGAGGTTAGCTCGGTGTCCAATTTCGAGAGCTTCCAAGCCAATCGTCTGAAGTGCCGTTATCGCAATGCGG ATAAAAAAGTGGAGCTTTGCCACACGCTCAACGGTAGTGCCTTGGCCTTGCCGCGTATCGTGGCTGCTCTGCTGGAAAAC AATCAGACAGCCGATGGCATCCGCATCCCCGACTGTCTGGTACCTTATACAGGCTTCTCGATGATCGATTGA Protein sequence : MLTLKQIIENKEEVIRRLAVKHFDAAAILDEVISLDRQRRETQQSLDARLAEQNAIAKEIGALMKAGKKGEAEAIRTKVA DMKAESHHLEERKADLENAIRQQLLLIPNLPHESVPAGKTAEENVCVKTGGTVPELGAHKLPHWDLAKKYDLIDFELGVK ITGAGFPVYKGKGARLQRALINFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYHVTVDNLYLIPTAEVPVTN IFRDVILSEDELPIRLTAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVCIDKPEHSYEQLDHMVGYVQGLVDKLGLPWR ILRLCGGDISFTSALTYDFEVYSAAQERWLEVSSVSNFESFQANRLKCRYRNADKKVELCHTLNGSALALPRIVAALLEN NQTADGIRIPDCLVPYTGFSMID |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-73 | 45 |
