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Name : clpC (PGTDC60_0010) Accession : YP_004508747.1 Strain : Porphyromonas gingivalis TDC60 Genome accession: NC_015571 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 7402 - 9981 bp Length : 2580 bp Strand : + Note : similar to RefSeq{20100916}, gi|34539890|ref|NP_904369.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Porphyromonas gingivalis W83]|, percent identity 98.7 in 859 aa, BLASTP E(): 0 DNA sequence : ATGGCATACGACTTTACACAAACATTCCGCAACAGCCTGGAGTACAGCTATCAGGAAGCAACCCGTCTCGGCGTCGTAGC CGTGACGCAGGATATGCTCGTACTCGGTATCATTCGCGACGGAGACAATGGCGCGATCGACATCATGCGGCACTATGGGA TCAACTTGTACGAACTCAAACGGTTGATCGAGTTGGAAGCCATCGCCGAGAGTTTGCCTGCTTCGCCTGAGGGATCGCCC ATCTTCACCCCTTCGGCTCGGGAGGCTATCAATGATGCCACAGACATCTGTGCCGACATGGAGGACGAGGCCGTCAGCCC GGTCCATCTGTTGCTGAGTATCCTCAACTCGACACAGGAGAGCTTAGTACAAAAGATATTTATGAAACAAGGTATAAAAT ACGACACCATCCTGTCGGATTACTTCGGACAGCGCAACCCCTCCGAAGGGAAGTCTCCCTCCGAAATGGAGATCCTCGAC GGGTACCAAGACAACGACTTCGACGACGAAGAGGACGAATCCTCTCCGCCTTCCGGGAATGGCGGGGCAGGCAGAGGCTC CGGCGACGCCCCCGAACAGAATACCGGCGGAGGCGATACTACCACCACGACACGGAGTGGAGGCGACACGCCTGCACTGG ACACCTTCGGCACCGACATCACCGCCATGGCAGCAGCAGGCAAGCTCGACCCGGTAGTGGGTCGGGAGCAGGAGATCGAA AGGGTGATACAGATACTCAGCCGGCGCAAAAAGAACAATCCGGTGCTCATCGGCGAACCCGGTGTGGGCAAGAGTGCCAT CGTGGAAGGACTGGCCGAACGCATCGTGAACAGGAAGGTGAGCCGTATTCTTTTCGACAAGCGGATCATCAGCCTCGATT TGGCTCAGATGGTAGCCGGCACCAAATATCGCGGACAGTTCGAAGAGCGGTTGAAAGCCGTGCTCGATGAGCTGAAGAAG AATCCGCAGATCATCTTCTTCATCGACGAGATACATACCATCGTGGGAGCAGGCTCTGCAGCCGGATCGATGGATACGGC CAATATGCTCAAACCCGCTCTTGCCCGTGGACAGATACAGTGCATCGGAGCCACTACGCTGGATGAGTATCGTAAGAACA TAGAAAAGGACGGAGCACTCGAACGCCGCTTCCAGAAGGTGCCGATAGCCCCCTCGACTGCAGAAGAAACGCTGACCATC CTGCAAAACATCAAAGAGAAATACGAGGACTATCACGGTGTACGCTATACGGACGAAGCGATCAAAGCGGCAGTGGAACT GACCGATCGCTATGTATCCGATCGTTTCTTCCCAGATAAGGCGATAGATGCCATGGACGAGGCCGGCGCGAGCGTCCATA TCACCAATGTGGTGGCTCCGAAAGAAATTGAGATACTGGAGGCCGAATTGACATCGGTGCGAGAGAACAAGCTCTCGGCC GTAAAGGCTCAGAACTACGAACTGGCTGCCTCCTTCCGCGATCAAGAGCGGCGCACTCAGCAGCAGATAGCGGAAGAGAA GAAAAAATGGGAAGATCAGATGTCCAAGCACCGCGAGACGGTGGACGAGAATGTAGTGGCGCACGTAGTGGCGTTGATGA CAGGCGTTCCGGCTGAGCGGCTGAGCACGGGCGAAGGCGAACGTCTGCGCACGATGGCAGATGATCTCAAGACCAAAGTA GTAGGTCAGGACACAGCCATCGAAAAGATGGTGCGTGCCATCCAGCGCAATCGTCTGGGACTTCGCAATGAAAAGAAACC GATCGGCTCTTTCCTTTTCCTCGGCCCCACGGGGGTAGGCAAGACCTATTTGGCCAAGAAGCTCGCCGAATACCTGTTCG AGGATGAGAATGCCATGATCAGGGTGGATATGAGCGAGTATATGGAGAAGTTCTCCGTATCGCGTCTCGTGGGTGCCCCT CCGGGATATGTGGGCTATGAAGAAGGCGGCCAACTGACGGAGCGCGTAAGACGCAAACCCTATTCCGTGGTTCTCTTGGA TGAGATCGAAAAGGCGCATGCCGATGTCTTCAATCTGCTCTTACAGGTGATGGACGAAGGTCAGCTGACCGATAGTCTGG GACGGCGCGTGAATTTCAAGAACACCGTGATCATCATCACCTCCAACGTGGGTACACGCCAGCTCAAAGACTTCGGGCAG GGTATCGGGTTTCATTCGGAAAAAGACGAGGAAGCGAACAAGGAGCATAGCCGTTCCGTGATCCAAAAAGCCCTGAACAA GACGTTCAGCCCCGAATTTCTCAACCGTTTGGACGACATCATCCTCTTCGACCAACTGGGCAAGACGGAGATTCGCCGGA TGGTGGACATAGAGCTTAAATCCGTCTTGGCGCGCATCCATCGTGCCGGATACGACCTCGTCCTTACCGATGAAGCCAAG GATGTGATAGCGACGAAGGGATACGACCTCCAATACGGAGCACGACCGCTCAAGCGCACACTCCAGAACGAAGTGGAGGA TCGCCTCACGGATCTTATCCTCTCCGGACAGATCGAGAAAGGGCAGACGCTTACGCTCTCTGCTCGCGATGGCGAGATCA TCGTACAAGAACAAGCATAA Protein sequence : MAYDFTQTFRNSLEYSYQEATRLGVVAVTQDMLVLGIIRDGDNGAIDIMRHYGINLYELKRLIELEAIAESLPASPEGSP IFTPSAREAINDATDICADMEDEAVSPVHLLLSILNSTQESLVQKIFMKQGIKYDTILSDYFGQRNPSEGKSPSEMEILD GYQDNDFDDEEDESSPPSGNGGAGRGSGDAPEQNTGGGDTTTTTRSGGDTPALDTFGTDITAMAAAGKLDPVVGREQEIE RVIQILSRRKKNNPVLIGEPGVGKSAIVEGLAERIVNRKVSRILFDKRIISLDLAQMVAGTKYRGQFEERLKAVLDELKK NPQIIFFIDEIHTIVGAGSAAGSMDTANMLKPALARGQIQCIGATTLDEYRKNIEKDGALERRFQKVPIAPSTAEETLTI LQNIKEKYEDYHGVRYTDEAIKAAVELTDRYVSDRFFPDKAIDAMDEAGASVHITNVVAPKEIEILEAELTSVRENKLSA VKAQNYELAASFRDQERRTQQQIAEEKKKWEDQMSKHRETVDENVVAHVVALMTGVPAERLSTGEGERLRTMADDLKTKV VGQDTAIEKMVRAIQRNRLGLRNEKKPIGSFLFLGPTGVGKTYLAKKLAEYLFEDENAMIRVDMSEYMEKFSVSRLVGAP PGYVGYEEGGQLTERVRRKPYSVVLLDEIEKAHADVFNLLLQVMDEGQLTDSLGRRVNFKNTVIIITSNVGTRQLKDFGQ GIGFHSEKDEEANKEHSRSVIQKALNKTFSPEFLNRLDDIILFDQLGKTEIRRMVDIELKSVLARIHRAGYDLVLTDEAK DVIATKGYDLQYGARPLKRTLQNEVEDRLTDLILSGQIEKGQTLTLSARDGEIIVQEQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 8e-166 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004508747.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0079 | Protein | 9e-177 | 53 |
| clpC | YP_004508747.1 | ATP-dependent Clp protease, ATP-binding subunit ClpC | VFG0080 | Protein | 1e-148 | 49 |
