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Name : SerAS9_4041 (SerAS9_4041) Accession : YP_004507402.1 Strain : Serratia plymuthica AS9 Genome accession: NC_015567 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4324614 - 4327163 bp Length : 2550 bp Strand : - Note : PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: spe:Spro_2874 fimbrial biogenesis outer membrane usher protein DNA sequence : ATGAATAACCCGAATTGTATTGGTTTGCGAAGATCCAAAGCAATCTTGGCATGTCTGTTTTCCTGCCAGGCGATATTGCT GAATTCACCGAGTGTGGCGCAAGCGCGTGATTATTTTAACCCTGCGTTGCTGGAAATTGATAACCCGGCGCTGCGCGGAG CGGATCTTTCAGTTTTCGAGGAAAATATCACTCAGGCACCGGGAAGTTACCGGGTCGATCTTTATCTTAATGGCCAGCAG GTGGATTCCCTGGATGTCGAGTTCAGGCTCCAACAGGATGCAGCAGGGAAAAAAATGCTGCAGCCCTGCCTTAGCGCTGA AAAACTGACCGAGTTAGGTGTCAGGTTGAGTTCACTTCCCGCGATCGCCGGCTCGGATGATTGCGTCAACCTGCCTCAGG CCATTCCACAAGCAAAGGCCACTTTTTTATTCAACCAGTTGCGGCTGAATTTGAGCATTCCCCAGGCCGCGCTGAAGTTG AACGCGCGTGATTACGTATCCCCTGACAAGTGGGATGCCGGCGTACCGGCTCTGTTGGTCAACTATAGCTTCTCGGGTGC TAACAGCCAGGTGAGTGAAAGCAAAGGGCAGGGCAATGACAACTATTATCTCAACCTGCGCTCGGGAATTAACTGGGGTG CCTGGCGGCTGCGCAACTATTCGGTGTGGAACCAGCACAGCGGTAGCGCCTCTTCATGGCGTTCGATCAATACCTATTTG CAGCGCGACATCATTGCATTGCAGAGCCGTTTGACCTTGGGCGATAGCACCACTTCTAGCGATGTCTTCGACAGCGTGCA GTTTCGTGGCGGTCAGTTGGCCTCGGAAGATGAAATTCTGCCGGATAGCATGAAAGGTTATTCACCGATAGTGCGTGGGA TTGCGCGCAGCAATGCCCAGATTGTGATTCGGCAGAATGGCTATGTGATCTACCAAAGCTATGTGGCGCCTGGTGCGTTC GAGATTACCGATCTTTACCCCACCGGGGGTAGCGGCGATCTGAATGTGAGCGTGCGTGAAGCCAATGGCCAGGAGCAAAA CTTTGTGGTGCCTTATGCCGTAGTGCCGGTATTGCAGCGTGAGGGGCGGTTCAAATACAGCCTCACCAGTGGGACATATC GTTCTTATGGCAGTGAGGTCGATGAACGGCCTTTCAGTCAGGCTACCGGCATTTATGGGCTGCCCTGGGGCGCGACTTTA TACGGCGGCGTGCAGGCCGCGAGCAAGTATCAAGCCTTGGCTTTGGGCTGGGGGCAAAACCTGGGAACTGTCGGGGCCTT GTCCGCCGACGTAACCCAAGCCTGGACCAAACAGGAAACCCAGCCCAAGGACCAAGGGCAATCATGGCGTTTACGCTACG GTAAAAACGTTATCGAAACCGGCACCAACTTCAGCCTGGCCAGTTATCGCTATTCCACCCGTGGCTTCTATACCCTGCAA GAAGCGTTGGAAAGTTATGGCGGTAACAGTGCCAAATATAACGACCACAAGAAAAGCCGTGCCGAATTGATATTGAGCCA GAACCTGTGGAAGGGGGGCGGAACGCTGTCACTCAGCCTGTTCAACGAGGATTACTGGAATGATAGCCGTCGTTCGCAAT CGGCCAGCGTTGGCTACAACAACAACTGGCAAAGCATTAGCTACGGTTTCAATTACACCTTCAGCCAGAACGGTTTTGAC AGTAACGGCAAACGCAACAACGTTCGCGATCACATCCTGGCCTTTAACGTCAGCATCCCGCTGAACAAATGGCTGCCGGG CAGTTACGCCACCTACAACATGAACAGCAGCCGCAATGGCCCCACCAGCCATAACCTTGGGTTGAGTGGCAGCGCACTGG AAGGCAATAACCTGAACTACAGCCTTAGTCAGGGATATACCGGAAAAGGGGGAGGCGCCAATGGCAGCATTCAAGCCGAC TATAAAGGCTCCTTGGCTGAGCTGAACCTGGGCTATGGCTACGATCGCTATCGTCAGCAGGTGAACTACGGGATCCAGGG CGGTGTTTTGGTGCATCAAAACGGCATCACGTTGTCGCAGCCATTGGGCGATACGGTAGCGCTGGTACAGGCGCCCGGCG CTGCGGGTGTCAACGTGCTGAATCAGACCGGTGTGAATACCGATTGGCGCGGTTATGCGGTAGTGCCCTATCTGACGCCG TACCGCCGCAATATCGTTGGATTGGACGGCGATTCTTTTGCCGATGATGTGGATATGACTCTCAGCAGCCAAACGGTGAT CCCGACTCGCGGTGCCGTAGTGCGTGCCAGTTTTAGCCCCAATGTCGGTTTGCGCGTACTGATGACGTTGTTAACCAGGG CCGGAAGCCCGGTCCCGTTTGGCGCGACCGTCAGCGCTCTTAATGGGGCGAATGGCAATGCCAGTATTGTCGGTGACGGC GGACAAGTTTATCTGGCTGGGTTGGCTGACAGCGGTCGGCTACAGGTCAAGTGGGGAAATGGCGCTGCGCAACAGTGTCA GGTCAGCTATCAATTGGCTAACCAGCCTGAAAGCGGTGGGATTCGCTTGGTCAAGGGGCTGTGTTTATAA Protein sequence : MNNPNCIGLRRSKAILACLFSCQAILLNSPSVAQARDYFNPALLEIDNPALRGADLSVFEENITQAPGSYRVDLYLNGQQ VDSLDVEFRLQQDAAGKKMLQPCLSAEKLTELGVRLSSLPAIAGSDDCVNLPQAIPQAKATFLFNQLRLNLSIPQAALKL NARDYVSPDKWDAGVPALLVNYSFSGANSQVSESKGQGNDNYYLNLRSGINWGAWRLRNYSVWNQHSGSASSWRSINTYL QRDIIALQSRLTLGDSTTSSDVFDSVQFRGGQLASEDEILPDSMKGYSPIVRGIARSNAQIVIRQNGYVIYQSYVAPGAF EITDLYPTGGSGDLNVSVREANGQEQNFVVPYAVVPVLQREGRFKYSLTSGTYRSYGSEVDERPFSQATGIYGLPWGATL YGGVQAASKYQALALGWGQNLGTVGALSADVTQAWTKQETQPKDQGQSWRLRYGKNVIETGTNFSLASYRYSTRGFYTLQ EALESYGGNSAKYNDHKKSRAELILSQNLWKGGGTLSLSLFNEDYWNDSRRSQSASVGYNNNWQSISYGFNYTFSQNGFD SNGKRNNVRDHILAFNVSIPLNKWLPGSYATYNMNSSRNGPTSHNLGLSGSALEGNNLNYSLSQGYTGKGGGANGSIQAD YKGSLAELNLGYGYDRYRQQVNYGIQGGVLVHQNGITLSQPLGDTVALVQAPGAAGVNVLNQTGVNTDWRGYAVVPYLTP YRRNIVGLDGDSFADDVDMTLSSQTVIPTRGAVVRASFSPNVGLRVLMTLLTRAGSPVPFGATVSALNGANGNASIVGDG GQVYLAGLADSGRLQVKWGNGAAQQCQVSYQLANQPESGGIRLVKGLCL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 5e-151 | 43 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 2e-149 | 43 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 1e-138 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 1e-138 | 41 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 4e-140 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SerAS9_4041 | YP_004507402.1 | fimbrial biogenesis outer membrane usher protein | VFG0454 | Protein | 1e-177 | 46 |
| SerAS9_4041 | YP_004507402.1 | fimbrial biogenesis outer membrane usher protein | VFG0446 | Protein | 4e-150 | 45 |
| SerAS9_4041 | YP_004507402.1 | fimbrial biogenesis outer membrane usher protein | VFG1645 | Protein | 1e-149 | 43 |
| SerAS9_4041 | YP_004507402.1 | fimbrial biogenesis outer membrane usher protein | VFG0912 | Protein | 6e-150 | 43 |
| SerAS9_4041 | YP_004507402.1 | fimbrial biogenesis outer membrane usher protein | VFG0876 | Protein | 8e-154 | 42 |
