|
Name : SerAS9_2749 (SerAS9_2749) Accession : YP_004506131.1 Strain : Serratia plymuthica AS9 Genome accession: NC_015567 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 2947705 - 2949630 bp Length : 1926 bp Strand : - Note : SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: spe:Spro_2718 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim dom DNA sequence : ATGCGACTGTTTATTGCCGAGAAACCGAGTTTGGCGCGCGCCATTGCCGACGTTCTTCCCAAACCGCATCGCCGCGGTGA CGGGTTTATTGCCTGTGGCAACAATGATGTGGTCACCTGGTGTGTGGGCCATTTACTAGAGCAGGCGCAGCCGGATGCCT ACGATAGCCGCTATGCGCGCTGGTCGCTGGCGGATCTGCCCATTATCCCCGAAAAGTGGCAACTGCAGCCGCGTCCCTCG GTCAGTAAACAGCTTAATGCGATTAAAAAGCTATTACATGACGCTGACGAGGTAGTGCATGCGGGTGACCCGGATCGCGA AGGACAATTGCTGGTGGACGAAGTGCTGGACTATCTGGCGCTGACACCGGAAAAACGTCACAGCGTACGCCGTTGCCTGA TTAACGATCTCAACCCGCAGGCGGTGGAGCGCGCTATCGATCGGCTGCGTGACAACCGCGACTTTATCCCGCTGTGCGTC TCTGCGCTGGCGCGTTCCCGCGCTGACTGGCTGTATGGCATCAACATGACCCGCGCCTATACCATTTTAGGGCGAAATGC CGGCTACGACGGCGTGTTGTCCGTTGGGCGGGTGCAAACGCCGGTGTTGGGGTTAGTCGTGCGGCGTGATGAAGAAATTG AAAACTTTGTGCCAAAAGACTTCTTTGAAGTTAAAGCGCACATAGTGACGCCAAAGGAAGAGCGCTTTGTCGCGCTTTGG CAGCCGAGTGACTCTTGTGAACCTTATCAGGATGAAGAAGGGCGTTTGCTGCACCGGCCGCTGGCGGAGCACGTGCTTAA ACGCATCGAGGGCCAGCCGGCGCTGGTCACGTCTTATAATGATAAACGGGAATCAGATACCGCGCCGCTGCCGTTTTCGC TCTCGACGCTGCAAATTGAGGCTTCCAAACGTTTCAACCTGAGTGCGCAGCAGGTGCTGGATATCTGCCAGCGGTTGTAT GAAACGCATAAATTGATCACCTATCCGCGTTCCGACTGCCGCTACCTGCCGGAAGAACATTTCGCCGGGCGTCACGCGGT GCTTAACGCGATCAGCGCACATCAGCCGGATCTTTACCCGCAGCCGGTGATCGACAGCGATCGTCGCAACCGTTGCTGGG ACGATAAAAAAGTTGATGCTCACCATGCCATTATTCCCACTGCCCGCGCCAGCAAAGTGAGCCTCAGCCAGGACGAGCTG AACGTCTACGGGTTGGTGGCGCGCCAGTACCTGATGCAGTTTTGCCCGGATGCCATGTTCCGCAAATGCGTGATTGAACT GGATATCGCCGGGGGAAAATTCGTTGCCAAGGCGCGTTTCCTGGCCGAAGCGGGCTGGCGGACGCTGCTGGGCAGCAAAG AGCGCGATGAAGAAAATGAAGGTTCTCCGCTGCCGGTGGTGGCGAAAGATGATGAGCTATTGTGCGAACGTGGTGAGGTG GTGGAACGCCAGACTCAGCCTCCGCGGCCTTTCACCGATGCCAGTCTGCTTTCTGCTATGACCGGCATAGCGCGTTTCGT ACAAGATAAAGCGCTAAAGAAAATCCTGCGAGCGACCGATGGTTTAGGTACCGAGGCGACGCGTGCGGGCATCATTGAGT TGCTGTTCAAGCGGGCGTTTTTGTACAAGAAAGGACGCTATATTCATTCCAGCGAAACCGGCCGGGCGTTGATCCATTCG CTGCCGGATATTGCCGCTCGCCCTGATATGACGGCCAACTGGGAGGCTACGTTGACGCAAATCAGTGAAAAATCCTGCCG CTATCAGGACTTTATGCAACCCTTGGTAGGCACTTTGCAGGAGCTGATTTATCAGGCCAAGCAAAGCCGGGCGAGTATGG CGTTTCGCGGGTTGCCGCCGTCGCCTTCCGCCGGGGCAAAAAAACGCAAGAAAAGCGCCGGCAAGGCGCGGGAGAAAAGC GAGTGA Protein sequence : MRLFIAEKPSLARAIADVLPKPHRRGDGFIACGNNDVVTWCVGHLLEQAQPDAYDSRYARWSLADLPIIPEKWQLQPRPS VSKQLNAIKKLLHDADEVVHAGDPDREGQLLVDEVLDYLALTPEKRHSVRRCLINDLNPQAVERAIDRLRDNRDFIPLCV SALARSRADWLYGINMTRAYTILGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIENFVPKDFFEVKAHIVTPKEERFVALW QPSDSCEPYQDEEGRLLHRPLAEHVLKRIEGQPALVTSYNDKRESDTAPLPFSLSTLQIEASKRFNLSAQQVLDICQRLY ETHKLITYPRSDCRYLPEEHFAGRHAVLNAISAHQPDLYPQPVIDSDRRNRCWDDKKVDAHHAIIPTARASKVSLSQDEL NVYGLVARQYLMQFCPDAMFRKCVIELDIAGGKFVAKARFLAEAGWRTLLGSKERDEENEGSPLPVVAKDDELLCERGEV VERQTQPPRPFTDASLLSAMTGIARFVQDKALKKILRATDGLGTEATRAGIIELLFKRAFLYKKGRYIHSSETGRALIHS LPDIAARPDMTANWEATLTQISEKSCRYQDFMQPLVGTLQELIYQAKQSRASMAFRGLPPSPSAGAKKRKKSAGKAREKS E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-111 | 41 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 6e-104 | 41 |
