Gene Information

Name : SerAS12_4817 (SerAS12_4817)
Accession : YP_004503218.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 5198842 - 5199597 bp
Length : 756 bp
Strand : -
Note : PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: eta:ETA_02620 MrfD protein

DNA sequence : 
ATGAAACGTAATAACACCCTGAAGACGACGGCCATCGCCGTCGCCCTGCTGGGCGCCGCGGTGGCCCAGCAGGCTCAGGC
CGCGATTGCCCTGGACCGTACCCGGGTGATTTTCGACGGTGACCAGAAATCGGTCAGCCTGAACATCAGCAACCAGAACA
AGCAGTTGCCGTACCTGGCGCAGGGCTGGCTGGAAGACGACAAGGGCAACAAAATCCAGAGCCCGCTGACGGTGTTGCCG
CCGGTGCAGCGTGTTGAGCCGGGTAAGCCGAGCCAGGTGAAAATCCAGGCGCTGCCGGCGGCCAAGCAGTTGCCGCAGGA
CCGCGAGTCAATCTATTACTTCAACCTGCGTGAAATCCCGCCGAAGAGCGACAAGCCGAACACCCTGCAGATTGCCTTGC
AGACGCGCATCAAGCTGTTCTACCGCCCGGCGGCGATAGCCGTGCAGAAAAATACCGACCCGGCGCAAGAGCAACTGACG
CTGACCAAACAGGGCGACAAGTACGTGGTGAACAACCCGACGCCGTACTACGTGACCATCGTGGACGCGAGCAGCAAAAA
AGACGGCGCCGGCGTGAAGGGCTTTGAGCCGTTTATGGTGCCGCCGAAGGGCAACGCGCCACTGACGGTGAGTGCCGCCA
GCGTGGGCAGCGCCCCGGTGCTGACCTATATCAACGATTACGGCGGCCGTCCGCAGTTGACCTTCAGCTGCAGCGGCAGC
AGCTGCCAGGTGGTTGTGGATAAGAAGGCATCTTAA

Protein sequence : 
MKRNNTLKTTAIAVALLGAAVAQQAQAAIALDRTRVIFDGDQKSVSLNISNQNKQLPYLAQGWLEDDKGNKIQSPLTVLP
PVQRVEPGKPSQVKIQALPAAKQLPQDRESIYYFNLREIPPKSDKPNTLQIALQTRIKLFYRPAAIAVQKNTDPAQEQLT
LTKQGDKYVVNNPTPYYVTIVDASSKKDGAGVKGFEPFMVPPKGNAPLTVSAASVGSAPVLTYINDYGGRPQLTFSCSGS
SCQVVVDKKAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 3e-55 54
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 8e-55 53
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 6e-55 53
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 5e-55 53
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 8e-55 53
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 7e-55 53
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 7e-55 53
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 3e-49 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_4817 YP_004503218.1 Pili assembly chaperone VFG1547 Protein 5e-55 53
SerAS12_4817 YP_004503218.1 Pili assembly chaperone VFG0896 Protein 3e-55 53
SerAS12_4817 YP_004503218.1 Pili assembly chaperone VFG0885 Protein 1e-49 52