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Name : SerAS12_4768 (SerAS12_4768) Accession : YP_004503170.1 Strain : Serratia sp. AS12 Genome accession: NC_015566 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 5146683 - 5149184 bp Length : 2502 bp Strand : + Note : PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: spe:Spro_4673 fimbrial biogenesis outer membrane usher protein DNA sequence : ATGAGTGATTATTCTATGACGTCATTACTGACACGGAAAAAAAGACCCCTTACCGTCATTCTATCTTTCCTCTGGGCGCA TTCGGCTTTTTCCGCCACGGAATTCAATACTGACGTATTGGATATCGGCGATCGCAGCAAAGTGGATTTATCGCGTTTTT CCGACGCCGATTACGTCATGCCCGGCACCTATCTGCTGGATATCAAGATCAACCAGAAAACCCTGCCGCAGCGCCGCATC CAGTATTATCCGTCAGCGGATAAAAAGGACCGCTCCCGCGCCTGTCTGCCGCCGGATCTGGTGGAAAAAATGGCGCTGAA AGAGGAAGCCGCCAAAAAAATCACCCTGTGGCACGACAACCAGTGTGCCGATATCAGCGGGATCAAAGGGGCGACCCTTT CCGATCGTATCGGCGGCGGCGTGTTGGCGATCACCATTCCGCAGGCATGGATGAAATATTCCGATCCAGACTGGACCCCA CCTGAACAATGGGACGACGGTATTCCGGGGCTACTGTTGGACTACAACCTCAGCGGCCAGGTCGGCAAGCAAAGCCACAA TAACAACACCTCAGAAAATCTCAGCAGCTACGGTACGCTGGGTGCCAATATGGGCGCCTGGCGCCTGCGTGCCGATTATC AGGCCAATTACAATCAGCAGGCCGGCCAGCGTGACAGCGGTTTTGACTGGAACCAGATCTACGCCTATCGCGCACTGCCA ATGCAGGCCGCCAAGCTTACCCTCGGCGAAATCTTTCTCGACTCGGGGGTGTTCGATTCGTACCGCTTCACCGGCCTCAA TCTGGCCAGTGACGAGCGCATGCTGCCGCCAAACTTGCAAGGCTATGCGCCGGAAGTGCGCGGCATCGCCAAGAGCAACG CCAAAATCACCGTTTCCCAGGAAGGCCGCACGCTGTACGAAACCACGGTGCCTGCCGGGCCGTTCGCCATTCAGGATCTC AACAGTTCGGTGCGTGGCCGGCTGGATGTGAAGGTAGAAGAACAAGACGGCAGCGTCTCCACCTTCCAGGTCGATACCGC CACCATCCCTTATCTGACCCGCCCTGGCTATGTGCGCTACAACGTCGCACTGGGTAAGCCCTCGGCTTACGATCACCGCA CGCAGGGGCCGCTGTTCTCTGCCAGCGATTTCTCCTGGGGGCTGACCAGCGCCTGGTCGCTGTACGGCGGCGCGCTGCTC GGCGGCGATTACAACGCCTGGGCGCTCGGCCTGGGTCGTGATCTGAACATGTTTGGCGCCATGTCGCTGGACGTCACGCA GTCTATCGCGCGCCTGCCCAATGAACCGACCGCCAGCGGCATGTCGTTCAAGGTCAACTACGCCAAACGCTTCGATGAGC TGAACAGCCAGATCACCTTCGCCGGTTACCGCTTCTCGCAGCGCAAGTTCATGAACATGTCGCAGTATCTGCAAGAGCGT TACAACGACTACGACGAACACTACAACGGGCGCCAAAAAGAGCTGTACACCATCACCGCCAGCAAAACCTTTATGGCGGA AGACAGCGCCAAAGCGATCACCGCCTACCTGACCTATTCCCACCAGACCTATTGGGACGCCAAGGCACAGGATCGCTACG GGCTGTCTGCCAGCAAATTGTTCAACGTCGGTAACGTCAGCAACATCACCGCCTCGCTGTCGGCCTACCGCACGACCTAT CACGGCCGCACGGATGACAGCGTGATGCTGAACTTCAGCGTACCGATTGGCGATCGTCGCCGTATCGGTTACTCGCTGCA AAGCAGCAACAGCGACGTCACGCAGATGGCGTCCTACAACGACTACACCGATCCGAACAATACCTGGCAGGTCAGCGGCG GCTTCAACCAAGCCGGCAAATCGCTGGCTCGCGGTTACTACACCCGTAACGCCTCGTTCGGCTCGCTCAACGCCAGCGCC TCTTACCAACAAGACAGCTACTCCTCTATCGGCGGCACTTTCCGCAGCGGCATTACCGCCACCCGACACGGCGTGGCCGC GCACCAGAACTCCAGCAACGGCGGCAGCCGGATGATGCTCGACACCGACGGCATCGCCGGGGTGCCGATCAACAACGGTC GTGCCTACAGCAACCACTTCGGCCTGGCGGTGATTTCCGATATCACCAGCTACTACAACACCGATACCCGAATTGACGTC AACCGACTTGCGGACGACGTCGAAGCGACCCGAGCGGTAGTGCAAGGCACGCTGACCGAAGGCGCCATCGGTTACCGCCA CTTTGAGGTGGTGAAAGGCAGCAAGCTGCTGGCCACCATCAAGCTGGCCGACGGCAGCGAGCCGCCGTTTGGCGCTACGG TGCTGAGCGAGCGAGGCCGCGAAGTGGCGGTGGTGAACGACGGAGGATCGGTCTACCTGACCGGCGTCCAGCCGCAAGAA CAACTGGATGTCGCCTGGGAAGGCCAACGCCAGTGCCGCATCGTGATACCGGGCGCCGCCAAGCCGCTGGACCATCTGCT GCTGCCGTGCGCCAAACTGTAA Protein sequence : MSDYSMTSLLTRKKRPLTVILSFLWAHSAFSATEFNTDVLDIGDRSKVDLSRFSDADYVMPGTYLLDIKINQKTLPQRRI QYYPSADKKDRSRACLPPDLVEKMALKEEAAKKITLWHDNQCADISGIKGATLSDRIGGGVLAITIPQAWMKYSDPDWTP PEQWDDGIPGLLLDYNLSGQVGKQSHNNNTSENLSSYGTLGANMGAWRLRADYQANYNQQAGQRDSGFDWNQIYAYRALP MQAAKLTLGEIFLDSGVFDSYRFTGLNLASDERMLPPNLQGYAPEVRGIAKSNAKITVSQEGRTLYETTVPAGPFAIQDL NSSVRGRLDVKVEEQDGSVSTFQVDTATIPYLTRPGYVRYNVALGKPSAYDHRTQGPLFSASDFSWGLTSAWSLYGGALL GGDYNAWALGLGRDLNMFGAMSLDVTQSIARLPNEPTASGMSFKVNYAKRFDELNSQITFAGYRFSQRKFMNMSQYLQER YNDYDEHYNGRQKELYTITASKTFMAEDSAKAITAYLTYSHQTYWDAKAQDRYGLSASKLFNVGNVSNITASLSAYRTTY HGRTDDSVMLNFSVPIGDRRRIGYSLQSSNSDVTQMASYNDYTDPNNTWQVSGGFNQAGKSLARGYYTRNASFGSLNASA SYQQDSYSSIGGTFRSGITATRHGVAAHQNSSNGGSRMMLDTDGIAGVPINNGRAYSNHFGLAVISDITSYYNTDTRIDV NRLADDVEATRAVVQGTLTEGAIGYRHFEVVKGSKLLATIKLADGSEPPFGATVLSERGREVAVVNDGGSVYLTGVQPQE QLDVAWEGQRQCRIVIPGAAKPLDHLLLPCAKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-179 | 48 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 1e-177 | 48 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 1e-177 | 48 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-179 | 48 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 3e-179 | 48 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-179 | 48 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SerAS12_4768 | YP_004503170.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 1e-179 | 48 |
| SerAS12_4768 | YP_004503170.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 1e-179 | 48 |
| SerAS12_4768 | YP_004503170.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 1e-179 | 48 |
