Gene Information

Name : SerAS12_0418 (SerAS12_0418)
Accession : YP_004498883.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 464481 - 465143 bp
Length : 663 bp
Strand : -
Note : KEGG: spe:Spro_0478 DNA-binding transcriptional regulator BasR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region

DNA sequence : 
ATGAAACTGCTGATTGTTGAAGACGATGAGCTGTTGCAGCAAGGGCTGGCGCTGGCATTGGCCAACGAAGGTTATGCCTG
CGACTGCGCCGCTACGGCGGCGCAAGCCAATGCGCTGCTCATTACCAGCCAATACAGCATGATCATCCTCGATCTCGGTC
TGCCCGACCAGGACGGCGCCAGCCTGCTGCGACAGTGGCGCCGTCAGCAAGTCGACTTGCCGGTGCTAATCCTCACCGCC
CGAGATGCACTGGAAGACCGTGTCGACGGGCTGGACGCCGGTGCTGACGATTACCTGGTGAAGCCCTTCGCGCTGGTTGA
GCTGCAGGCGCGGGTTCGCGCCTTAATCCGCCGCTATCAGGGCCACAGCGACAACCTCATGCAACTCGACGATCTCCAGC
TCAATCTTTCCAGCCAGCAGGTTTACGTTCAACAGCAGCCGGTTGAAGTCACGCCAAAAGAGTTCGCCATCCTGTCTCGC
CTGATGATGCGCGCCGGGCAAACGGTCAATCGTGAACTGCTGCAACAGGACCTTTACACCTGGCAGGATGATTTAGGCTC
CAATACGCTGGAAGTGCATATCCATAACCTGCGCCGCAAATTGGGCAAGGATCGCATCCGCACCGTCCGCGGTATCGGTT
ATCGCCTGGAATCCTCATCATGA

Protein sequence : 
MKLLIVEDDELLQQGLALALANEGYACDCAATAAQANALLITSQYSMIILDLGLPDQDGASLLRQWRRQQVDLPVLILTA
RDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQGHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSR
LMMRAGQTVNRELLQQDLYTWQDDLGSNTLEVHIHNLRRKLGKDRIRTVRGIGYRLESSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-29 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator BAC0487 Protein 7e-50 66
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 3e-22 43
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator BAC0530 Protein 3e-22 43
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 3e-21 42
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator CP001918.1.gene2526. Protein 2e-22 41
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator CP001138.1.gene1939. Protein 4e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-43 57
SerAS12_0418 YP_004498883.1 winged helix family two component transcriptional regulator VFG0475 Protein 4e-22 41