Gene Information

Name : SerAS12_4198 (SerAS12_4198)
Accession : YP_004502603.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4490755 - 4491417 bp
Length : 663 bp
Strand : -
Note : KEGG: spe:Spro_3990 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region

DNA sequence : 
ATGCGAATTCTACTGATAGAAGACGACAAGTTAATCGGTGACGGCATCAAGGCCGGGTTGACCAAACTCGGCTTTAATCT
GGACTGGTTTACCGACGGGGTGGTCGGCAAAAACGCGTTGGAAAGCGCACCTTACGATGCGGTGATCCTCGATCTCAGCT
TGCCGGGCCTTGATGGGCTGGATTTGTTGCGCCAATGGCGCCAGGCCGGTCATGATGTGCCGGTGCTGATCCTTACCGCG
CGTGACGCACTGGAGCAGCGGGTCAGTGGCCTGCAGAGCGGTGCCGATGATTACCTGTGCAAACCTTTCGCCCTGACGGA
AGTCGCGGCGCGCCTGCAGGCGTTGATCCGCCGCCGTCATGGCCAACTGATGCCGCAGCTGGTGCATGGCAACCTGGTGT
TTGACTCGGCCACTCGCAGCCTGAGCTGCAACGGCGAGCCGGTAACCTTGACGCCGCGTGAACTGGCGCTGCTGGAGCTG
TTCCTGCATAACAAGGGGCGAGTGTTGGCGCGGCCGCTGATCCAGGAAAAACTGTACAACTGGGATGACGAAGTCAGCAG
TAATGCAGTGGAAGTGCATATCCATCACCTGCGGCGCAAGTTGGGTAACGGTTTTATCCGCACCATTCACGGCGTGGGCT
ACACGTTGGGGGAAGTTTCGTGA

Protein sequence : 
MRILLIEDDKLIGDGIKAGLTKLGFNLDWFTDGVVGKNALESAPYDAVILDLSLPGLDGLDLLRQWRQAGHDVPVLILTA
RDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIRRRHGQLMPQLVHGNLVFDSATRSLSCNGEPVTLTPRELALLEL
FLHNKGRVLARPLIQEKLYNWDDEVSSNAVEVHIHHLRRKLGNGFIRTIHGVGYTLGEVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-34 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator BAC0487 Protein 1e-31 46
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-22 43
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-28 41
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator VFG0473 Protein 9e-33 44
SerAS12_4198 YP_004502603.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-28 41