Gene Information

Name : SerAS12_4096 (SerAS12_4096)
Accession : YP_004502503.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4378887 - 4380101 bp
Length : 1215 bp
Strand : -
Note : PFAM: Integrase, catalytic core, phage; KEGG: spe:Spro_3887 integrase family protein

DNA sequence : 
ATGCCCCTCACAGACCTTGAGCTACGGCGCTCTAAGCCGCAAGACAAGCCCTATACACTCAGTGATGGCGGTGGGCTTTC
TATACTCATTGAGCCGAACGGTTCCAAAGGCTGGCGCTTTCGCTACCGCTTCGACGGTAAACCCAAAATGCTTTCCCTCG
GCACATATCCCACAGTTTCACTAACCGACGCAAGGCAAAAGCGCGATGAGGCTAAAAAGCTGGTGGCATCGGGCATTAAC
CCCAGCGAAGCCAGGAAGCAGCAGAAACGAGATCGGCAAGATGTGACTGGCAATACCTTCGAGGGGATAGCGCGGGAATG
GTACGTCAAGCGGCGAGATCGCTGGTCAGAGTCCTACGCAGAAGAGATGATGAAAACGTTTGAGAGCGATGTTTTCCCAT
ACATCGGCCATCGGCCAATTGCCGAAATAAAGCCAATGGAGCTTATGGGGACGCTTTCTAAACTCGACGAACGTGGCGCA
ACAGAGAAGTTACGCAAGGTGCGCCAGCGGTGTGGGGAGGTATGGAAATATGCCATCGTCACCGGTAGGGCTGAATATAA
CCCAGCTCCAGATCTCGCCAGCGCGTTCTCACCGCATAAAAAAGAACACTATGCCTTCTTGTCAGTTGCCGAGCTGCCCG
ACTTTTTCCGCACCTTTAACACATACACCGGCAGCCTGATCGTTAAGCTGGCTATGCGCTTGCTTATTATCACAGGGACA
AGGCCGGGAGAACTGCGTAAGGCTGAATGGTCGGAGTTTGATTTTGATAACCGACTCTGGGAAGTACCGCCCGAACGCAT
GAAGAAACGCCGCCCTCATTGTGTACCTTTATCCGACCAGGCCATCAGTATCCTGGAACAGCTTAAACCGCTGACCGGTC
ATTACAGCTACGTGTTTCCGGGCAGGATCCACCACAGCAAGCCAATAAGCGAAATGGCTATGAATGTTCTGGTTCGCCGT
ATTGGTTACGCTGGGCGTGTAACAGGCCACGGCTTCCGCCACACCATGAGCACCATTCTGCACGAGCAGGGCTATAACAC
CGCTTGGATTGAAACTCAGTTGGCCCATGTCGATAAAAATTCTATCCGTGGCACATACAACCATGCCCAATACTTGGATG
GTCGCCGGGAAATGCTTCAGTGGTATGCCGATTATATAGATGCGCTGGAGCGTGGCGATAATGTTGTGCATGGCACATTT
GGGAAAAGTGCATGA

Protein sequence : 
MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVSLTDARQKRDEAKKLVASGIN
PSEARKQQKRDRQDVTGNTFEGIAREWYVKRRDRWSESYAEEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGA
TEKLRKVRQRCGEVWKYAIVTGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLLIITGT
RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSYVFPGRIHHSKPISEMAMNVLVRR
IGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYIDALERGDNVVHGTF
GKSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAD44730.1 Int Not tested SHI-2 Protein 5e-123 61
int CAC39282.1 integrase Not tested LPA Protein 1e-124 61
aec33 AAW51716.1 Int Not tested AGI-3 Protein 8e-125 61
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 4e-118 61
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-123 61
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-124 61
int ACU09430.1 integrase Not tested LEE Protein 9e-124 61
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-123 61
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-122 60
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-122 60
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-122 60
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-111 53
intA AAB00935.1 integrase A Not tested vap locus Protein 1e-61 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 6e-71 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-71 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 7e-73 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 7e-73 41
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 3e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_4096 YP_004502503.1 integrase family protein VFG0783 Protein 5e-124 61
SerAS12_4096 YP_004502503.1 integrase family protein VFG0598 Protein 1e-122 60