Gene Information

Name : SerAS12_2108 (SerAS12_2108)
Accession : YP_004500542.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2263257 - 2264261 bp
Length : 1005 bp
Strand : -
Note : PFAM: Bacterial transport system permease protein; KEGG: spe:Spro_2166 transport system permease

DNA sequence : 
ATGCCTGGCCGCACCTCTGCGCGCGTGACCATTGCCGGCCTGTTGGTGCTGCTTGCGCTATTGGCGCTGGGCGCCGCCAA
TATGGGCGCGCTGACGCTGTCGTTTCGCACCCTGTGGCAAGAGCCGTTCAGCGATACCTCTTGGCATATCTGGCTAAACA
TCCGCTTGCCGCGTGTGCTGCTGGCGGTGGTCATCGGCTGCGCACTGGCGGTGTCCGGCGCCGTCATGCAGGGGCTGTTC
CGCAATCCGCTGGCCGATCCCAGCCTGTTGGGCATCAGTAGCGGCGGCGCGCTGTTTGTCGCGCTGATTATCGTTATGCC
GCTGGCCCTGCCGCCGGTGATTGCCTTGTATGGCCACATGTTGGCGGCTTTCCTCGGCAGCCTGCTGGTGTCACTGCTGA
TCTACGGCATCAGCCGCAGCGGGCACGGCAGCCTGTCACGCCTGTTGCTGGCGGGGATCGCCATCAACGCCCTGTGCATG
GCGGCCATCGGCGTGCTGTCTTATCTCAGCAGCGATCAACAGCTACGCCAGTTTTCATTGTGGATGATGGGCAGCCTGAG
CCAGTCACAGTGGCCAACGCTGATCGTATCGGCCTCTTTGATCCTGCCGGCGGCCCTGCTGACGCTGTTACAGGCGCGCT
GCCTGAACCTGCTGCAACTGGGCGATGAAGAGGCGCACTACCTCGGCGTGAATGTCCAGCGTGCCAAACTGCAATTGCTT
CTGCTTAGCGCATTGTTGATTGGCGCAGCGGTGGCGATGAGCGGCGTCATTGGCTTTATCGGCCTGGTGGTGCCGCACCT
GGTGCGCATGCGACTCGGCGGCGACCACCGCTGGCTGCTGCCCTGCTCCGCGCTGGGCGGCGCCTGCCTGCTGCTGGTCA
GCGACACACTGGCACGGACGCTGGTGGCGCCGGCGGAGATGCCGGTCGGGCTGATGACCAGCCTGATTGGCGGGCCTTAT
TTCTTATGGCTGGTCATGCGCCAGCGGGAGCGTACGGATGGGTAA

Protein sequence : 
MPGRTSARVTIAGLLVLLALLALGAANMGALTLSFRTLWQEPFSDTSWHIWLNIRLPRVLLAVVIGCALAVSGAVMQGLF
RNPLADPSLLGISSGGALFVALIIVMPLALPPVIALYGHMLAAFLGSLLVSLLIYGISRSGHGSLSRLLLAGIAINALCM
AAIGVLSYLSSDQQLRQFSLWMMGSLSQSQWPTLIVSASLILPAALLTLLQARCLNLLQLGDEEAHYLGVNVQRAKLQLL
LLSALLIGAAVAMSGVIGFIGLVVPHLVRMRLGGDHRWLLPCSALGGACLLLVSDTLARTLVAPAEMPVGLMTSLIGGPY
FLWLVMRQRERTDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 2e-19 42
fecC AAL08453.1 FecC Virulence SRL Protein 8e-23 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2108 YP_004500542.1 ABC transporter BAC0163 Protein 1e-19 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2108 YP_004500542.1 ABC transporter VFG0922 Protein 3e-70 65
SerAS12_2108 YP_004500542.1 ABC transporter VFG1043 Protein 1e-19 42
SerAS12_2108 YP_004500542.1 ABC transporter VFG1044 Protein 4e-23 42