Gene Information

Name : SerAS12_2073 (SerAS12_2073)
Accession : YP_004500507.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : metal ion ABC transporter periplasmic protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2227177 - 2228121 bp
Length : 945 bp
Strand : -
Note : PFAM: ABC transporter metal-binding lipoprotein; KEGG: spe:Spro_2133 periplasmic solute binding protein

DNA sequence : 
ATGTTTTTGAAACAACGCGCTTTTCCCCGCCAGCCACTCATTCAGGCTACGGCGTTTTACCGCCCTTTTGCCCTGCTGTG
GCTGCTGCTTGTCGCGGGCCTCGCCAGCAATCCCGCTTTAGCGGAAAAGAAACTGCGCGTGGTGACGACCTTCACCATCA
TTCAGGACATCGCTCAAAACGTGGCCGGCGACGCCGCGGTGGTTGAGTCTATTACCAAACCGGGAGCGGAGATCCACGAT
TATCAGCCAACGCCACGCGATATCGTTAAAGCACAGCACGCCGATTTGATCCTGTGGAACGGTATGAACCTCGAACGTTG
GTTCCAACGCTTCTTCGAGAACATCAAACAGGTTCCCGCCGCCGTGGTAACCGAAGGCATCACCCCGCTGCCAATCCGCG
AAGGGCCGTATAACGGCAACCCGAATCCGCATGCCTGGATGTCTGCCAGCAATGCGCTCATCTATATAGAAAACATCCGT
AAAGCCCTGGTGCAGCACGACCCGGCCAACGCAGAAACCTATAACCGCAACGCCAAAGCCTATGCCGCCAAAATCAGCGC
ACTGGATGCCCCGCTGCGCGAGCGCCTGTCGCGTATTCCCGCAGCCCAACGTTGGTTGGTTACCAGCGAAGGCGCATTCA
GCTATCTGGCGAAAGACTATCAGTTGAAAGAAGTCTATCTGTGGCCAATTAACGCCGACGAGCAAGGTTCGCCGCAGCAA
GTTCGCCGGGTCATCGACGCCGTTCGCGCCAACCGCATTCCGGTGGTCTTCAGCGAAAGCACCATCTCCGACAAACCGGC
CAGGCAGGTGGCGAAAGAAACCGGAGCGAAGTACGGCGGCGTGCTGTATGTCGATTCGTTGTCCACCCAGGGCGGCCCGG
TACCGACGTATATAGACCTGCTGAACGTCACCGTACAAACCATCGCCAAAGGATTTGATCAATGA

Protein sequence : 
MFLKQRAFPRQPLIQATAFYRPFALLWLLLVAGLASNPALAEKKLRVVTTFTIIQDIAQNVAGDAAVVESITKPGAEIHD
YQPTPRDIVKAQHADLILWNGMNLERWFQRFFENIKQVPAAVVTEGITPLPIREGPYNGNPNPHAWMSASNALIYIENIR
KALVQHDPANAETYNRNAKAYAAKISALDAPLRERLSRIPAAQRWLVTSEGAFSYLAKDYQLKEVYLWPINADEQGSPQQ
VRRVIDAVRANRIPVVFSESTISDKPARQVAKETGAKYGGVLYVDSLSTQGGPVPTYIDLLNVTVQTIAKGFDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-91 66
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-91 66
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-91 66
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-91 66
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-91 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2073 YP_004500507.1 metal ion ABC transporter periplasmic protein BAC0439 Protein 2e-112 84
SerAS12_2073 YP_004500507.1 metal ion ABC transporter periplasmic protein BAC0349 Protein 6e-92 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2073 YP_004500507.1 metal ion ABC transporter periplasmic protein VFG0525 Protein 6e-92 66