Gene Information

Name : SerAS12_2071 (SerAS12_2071)
Accession : YP_004500505.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2225430 - 2226290 bp
Length : 861 bp
Strand : -
Note : PFAM: ABC-3; KEGG: spe:Spro_2131 ABC-3 protein

DNA sequence : 
ATGCTGGACATTTTGCTGCAACCCTTCAATTACAACTACATGGTCAAAGCGATCTGGGTCAGCGCCATCGTCGGTGCCGC
CTGCGCGTTCCTGTCGGCCTATCTGATGCTGAAAGGCTGGTCGCTGATGGGCGATGCGCTGTCGCACTCGGTGGTGCCTG
GCGTCGCCGGGGCCTATGCCCTTGGTCTGCCGTACGCCGCCGGGGCCTTCTTCACCGGCATGCTGGCCGCGCTCGCCATG
ACGCTGGTACGCCACGTCACCCGCCTGCGCGAAGACGCAATCATCGGCTTTATTTTTTCGACCTTCTTCGCCGTTGGGCT
GCTGATCATTTCACTCAATCCTACGTCGATTAACGTGCAGTCGATTATCTTCGGCAATATTCTCGGCATCGCCGACGAAG
ACGTACTGCAAGTCGAGATTATCATCGGCGTCTCGCTGCTGATTCTGTGCCTGGTGTGGAAAGACCTGCTGGCGGTGTTC
TTTGACGAAAGCCACGCGGTGTCGATTGGTCTGTCGCCGCTGCGGATGAAAATCCTGTTCTTCACCCTGCTCAGCGCCTG
CACCGTCGCGGCATTACAAACCGTCGGGGCGATTTTGGTGATCGCCATGGTGATTACGCCAGGCGCCACCGCCTATCTGC
TGACCGACCGCTTTAGCCGTTTAGTGATTATCGCCATCGTCATCGGCGCGCTGACCAGCGGTGTCGGTGCCTACCTGAGC
TTCTTCCTTGACGGCGCTACCGGCGGCGTGATCGTGACCCTGCAGACGCTGGTGTTCCTGGCGGCGTTTTTCTTCGCCCC
CAAACACGGCCTGCTGGCGTCCCGGCGCCGCGTAGCCCGTGAACAGACCGGAGGCCACTGA

Protein sequence : 
MLDILLQPFNYNYMVKAIWVSAIVGAACAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLVRHVTRLREDAIIGFIFSTFFAVGLLIISLNPTSINVQSIIFGNILGIADEDVLQVEIIIGVSLLILCLVWKDLLAVF
FDESHAVSIGLSPLRMKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFSRLVIIAIVIGALTSGVGAYLS
FFLDGATGGVIVTLQTLVFLAAFFFAPKHGLLASRRRVAREQTGGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-76 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-76 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-76 66
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-76 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-76 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2071 YP_004500505.1 ABC transporter BAC0441 Protein 1e-102 89
SerAS12_2071 YP_004500505.1 ABC transporter BAC0351 Protein 2e-76 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2071 YP_004500505.1 ABC transporter VFG0527 Protein 2e-76 66