Gene Information

Name : SerAS12_2070 (SerAS12_2070)
Accession : YP_004500504.1
Strain : Serratia sp. AS12
Genome accession: NC_015566
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2224570 - 2225430 bp
Length : 861 bp
Strand : -
Note : PFAM: ABC-3; KEGG: spe:Spro_2130 ABC-3 protein

DNA sequence : 
ATGGAAACCCTGTATCAACTGCTCAGCGAACCCTTCGCCTACCCGTTTATGCAGCGGGCGATCCTGGCTGCTATCGTTAC
CGGCGTGGTGTGTGCTGTGCTGTCGTGCTATCTGGTGCTCAAAGGCTGGTCGCTGATGGGCGATGCTATCTCTCATGCTG
TTCTGCCCGGCATTGTCGTGGCGTTCGTGCTTGGCATCCCGGTGGTTATCGGCGCGTTTTTCTCCGGCATTTTCTGCGCG
CTAGCCACCGGCTATCTGAAAGAGAACAGCCGGGTAAAAGAGGACACGGTGATGGGCATCGTTTTCTCCGGCATGTTCGC
CTTCGGGCTGGTACTGTTTTCCCGCGTCGATACCGATCAGCATCTGAGCCACATCCTGTTCGGCAATATGCTGGGGATTA
CCGACGCCGAGCTGAAACAAACGCTGCTGATTGCCGGCATTACGCTGGTGGTGGTGTTGCTCAAGCGCAAAGATCTGATG
CTCTACTGTTTCGACCCGAGCCATGCCAGGGTCATCGGTCTGCCGGTAAAACTGCTGCATTATGGGCTGCTGTGCCTGCT
GGCGCTGACGATTGTCGCTTCTCTGCAGGCGGTCGGGGTGATACTGGTGATTGCGATGCTGATAGCGCCAGGCATTATTG
CCTTTATGCTGTGCCGCAGTTTTGATCGCATGCTGATCATCGCGACTCTGGTGTCGGTATTCTCCTGCGTGCTCGGCACC
CTGATCAGCTTTCACATCGACGGTGCCACCGGCCCCTGTATTGTGATCGTCCAAGCAGTTGCGTTTATTGTCGCCCTGCT
CTACAGCAAACTCAGGCCGTTACAACGTCACGAAGAGGCGTTGTTCAGCGAGAAACCTTAA

Protein sequence : 
METLYQLLSEPFAYPFMQRAILAAIVTGVVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFVLGIPVVIGAFFSGIFCA
LATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRVDTDQHLSHILFGNMLGITDAELKQTLLIAGITLVVVLLKRKDLM
LYCFDPSHARVIGLPVKLLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMLCRSFDRMLIIATLVSVFSCVLGT
LISFHIDGATGPCIVIVQAVAFIVALLYSKLRPLQRHEEALFSEKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-58 54
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-58 54
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-58 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-58 54
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-58 54
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-44 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-44 43
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-44 43
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-44 43
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2070 YP_004500504.1 ABC transporter BAC0442 Protein 8e-99 85
SerAS12_2070 YP_004500504.1 ABC transporter BAC0352 Protein 1e-58 54
SerAS12_2070 YP_004500504.1 ABC transporter BAC0441 Protein 1e-42 46
SerAS12_2070 YP_004500504.1 ABC transporter BAC0351 Protein 7e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SerAS12_2070 YP_004500504.1 ABC transporter VFG0528 Protein 1e-58 54
SerAS12_2070 YP_004500504.1 ABC transporter VFG0527 Protein 7e-45 43