|
Name : SerAS12_1111 (SerAS12_1111) Accession : YP_004499566.1 Strain : Serratia sp. AS12 Genome accession: NC_015566 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1218015 - 1220618 bp Length : 2604 bp Strand : + Note : KEGG: ecp:ECP_0296 fimbrial usher protein; region: usher; pfam00577; manually curated; PFAM: Fimbrial biogenesis outer membrane usher protein DNA sequence : TTGTTTCATTCCAAAAAAATCCGGCACGCCCGTATATTGCATAAAAAGAGAGTAACGGCTCGCATTATCTCATTAGCCTA TTTTATTGGTATGAGCATATCTGCCGCGCGTGCAGAATTATATTTTAATCCACGTTTTTTGTCTGACGATCCGGACGTCG TTGCTGATTTATCTGCATTTTCACGTGGTCAAGAGATCCCACCCGGCACATATCGGGTAGATGTTTATATGAACGACGTA TACATCTCAACCCAGGATATTGAATTTCAGCCGTCAAAGGAAGGGAAACTCATGCCGTGCCTTACCCCCACCCAAATTGA ATCGATGGGGGTAAACAAGTATTCAGTTCCGGGAATGGATAAGCTGGAGCCTGATGTATGCATGTTGCTGACCTCGATGA TAAACGGTTCAACATATAATTTTGATGTTGGCCTACAGAGATTAAATATAACGGTCCCTCAGGTATTTATGTCGAATAAG GCCCGGGGATATATCGCGCCGGAATTCTGGGACAATGGCATAACAGCGGCCATGATTAATTATGATTTTAACGGGAGTCG TTCCCGTAATGGTCATATAGGTAGCGGTGAGAGTGCTTATCTTAGCCTGCAAAGCGGCTTTAATATTGGTGCCTGGCGTC TTCGCGATAACAGAAACTGGAGTTACAACAATGGACGGGCAGGAACCCAAAGCCGATGGCAGCATGTCAACTCTTATATA GAAAGAGATGTCATTCCGCTCCGTTCCCACTTGACTGTGGGAGATAGTTACACGTCAGGTGATATTTTTGATGGTTTCAA TTTTAGAGGGATCAAGCTGGAGTCAAACCTGAATATGCTTCCTGACAGCCAACGAGGATTTGCGCCAACAATACGCGGTA TTGCGCGAGGCACTGCGCAGGTGAGCATAAAACAGAACGGATATGAAATCTATCAAACCACTGTACCGCCAGGGCCGTTT GTCATCAGTGACCTCTATCCGGCAAGCAGCGGCGGTGATTTACAGGTTATGGTAAAAGAAACTGACGGAAGTATTCAGCA ATTTAGTGTTCCGTGGGCATCGGTACCTCTTCTGCAGCGCGAGGGGCAGGCAAAGTATTCCCTCAATGCAGGCGAATTCC GAAGTGGCAATACTCAACTGGACACACCCGGTTTTGCTCAGGGGACGCTTAGCTACGGTTTTCCTGACGGTTGGACAGCC TATGGCGGTCTGCATTTAGCGGAGCGTTATCGGGCTTTTAACCTGGGCGTCGCTAAAAATATGGGACGAATGGGGGCAAT GTCTCTGGATGCCACTCAGGCTAATGCCGTATTGCCTGATGATAGCCATAATAATGGTCAGTCCTACCGTTTTCTTTACA ACAAAGCACTACCAGAAACGGGGACCAGTGTACAGTTGATCGGATATCGGTACTCTACGCAAGGATATTTCAATTTTTCT GATACCGCACATCAGAAAATGAGTGGTTATAGTGTCGCCACCCAGGACGGGGACATCCAGATCCGTCCCAAATACACTGA CTATTATAACCTTGCTTATAAAAAGCGTGGCCGATTACAACTCAGCATCAGTCAACAGGCGGGGGCATCATCAACACTAT ATTTAAGTGGCAGTCATCAAACATACTGGGGATCGAAGAAAACTGATCGTCAATTGAACGCCGGATTCAATTCTTCGGTA GGTAATATCAACTGGTCCCTGAATTACAGTCTAACGAAGAACGCCTGGCAGGACGGAACTGACAGAATGTTATCGTTTGA TGTGAATATTCCATTCAGTCGATGGATGCGCTCAGACAATACATCCGAATGGAGGACAGCAAATGCCCGTTTCAGCCAGT CATGGCAGCAAGACGGGCAGGCAACCAGTATGGCCGGACTGTACGGAACATTACTCCCGGATAATAACCTGGGATACAGT GTCCAAAGTGGATATACCCATAATGGGTACCAAGACAGTCATCAGACAGGCTATGCCTCGATGAATTATCGTGGAGGATA TGGCAATGTGAATGTCGGGTACAGTCATGGAAGCGATTTTAAGCAATTCCATTATGGCCTGAGTGGTGGGCTCCTTGCTC ATGCTAATGGCGTGACACTGAGCCAACCGATGGGGGATACAATGATCCTCGTAAAAGCGCCGGGAGCTGCTAACACTCGA ATAGAAAACCAGACCGGTATATCAACAGACTGGAGAGGGTATTCTGTCGTGCCTTATGCAATAGATTATCGTGAAAATCG GGTTGCTCTGGATACAAATACACTGGCTCCAAATGTAGATATTGAAAACTCGGTGGTTACCGTTGTGCCTACACGCGGCG CTGTTGTCAGGGCAGATTACAAGACCCGCGTAGGTGTGAAAGTCTTGATGACGCTGAAAAGGAATGGAAAACCCGTTCCG TTTGGCGCTGTTGTCGCAACAGAAAACTCAGGGGGGAGTATTGTCGGAGACAATGGGCAGGTTTATCTGAGTGGAATGCC ACTATCCGGAAAAGTCAACGTAAAATGGGGCAACGGGCTTAAAGATCAGTGCCATGCCAGTTATAAACTGCCTAAAAGTA GTCAAAAAGAGATATTAAGCAACATTACGGTTAATTGCAGGTGA Protein sequence : MFHSKKIRHARILHKKRVTARIISLAYFIGMSISAARAELYFNPRFLSDDPDVVADLSAFSRGQEIPPGTYRVDVYMNDV YISTQDIEFQPSKEGKLMPCLTPTQIESMGVNKYSVPGMDKLEPDVCMLLTSMINGSTYNFDVGLQRLNITVPQVFMSNK ARGYIAPEFWDNGITAAMINYDFNGSRSRNGHIGSGESAYLSLQSGFNIGAWRLRDNRNWSYNNGRAGTQSRWQHVNSYI ERDVIPLRSHLTVGDSYTSGDIFDGFNFRGIKLESNLNMLPDSQRGFAPTIRGIARGTAQVSIKQNGYEIYQTTVPPGPF VISDLYPASSGGDLQVMVKETDGSIQQFSVPWASVPLLQREGQAKYSLNAGEFRSGNTQLDTPGFAQGTLSYGFPDGWTA YGGLHLAERYRAFNLGVAKNMGRMGAMSLDATQANAVLPDDSHNNGQSYRFLYNKALPETGTSVQLIGYRYSTQGYFNFS DTAHQKMSGYSVATQDGDIQIRPKYTDYYNLAYKKRGRLQLSISQQAGASSTLYLSGSHQTYWGSKKTDRQLNAGFNSSV GNINWSLNYSLTKNAWQDGTDRMLSFDVNIPFSRWMRSDNTSEWRTANARFSQSWQQDGQATSMAGLYGTLLPDNNLGYS VQSGYTHNGYQDSHQTGYASMNYRGGYGNVNVGYSHGSDFKQFHYGLSGGLLAHANGVTLSQPMGDTMILVKAPGAANTR IENQTGISTDWRGYSVVPYAIDYRENRVALDTNTLAPNVDIENSVVTVVPTRGAVVRADYKTRVGVKVLMTLKRNGKPVP FGAVVATENSGGSIVGDNGQVYLSGMPLSGKVNVKWGNGLKDQCHASYKLPKSSQKEILSNITVNCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 71 |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SerAS12_1111 | YP_004499566.1 | fimbrial biogenesis outer membrane usher protein | VFG1645 | Protein | 0.0 | 71 |
| SerAS12_1111 | YP_004499566.1 | fimbrial biogenesis outer membrane usher protein | VFG0912 | Protein | 0.0 | 71 |
| SerAS12_1111 | YP_004499566.1 | fimbrial biogenesis outer membrane usher protein | VFG0876 | Protein | 0.0 | 62 |
| SerAS12_1111 | YP_004499566.1 | fimbrial biogenesis outer membrane usher protein | VFG0446 | Protein | 2e-172 | 47 |
| SerAS12_1111 | YP_004499566.1 | fimbrial biogenesis outer membrane usher protein | VFG0454 | Protein | 3e-152 | 41 |
