Gene Information

Name : Desca_0357 (Desca_0357)
Accession : YP_004496165.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 373756 - 374424 bp
Length : 669 bp
Strand : -
Note : KEGG: tjr:TherJR_2638 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver

DNA sequence : 
ATGAGACTGCTGTTAGTTGAGGATGAACAACGTTTATCAGACGCCCTGGCTTATATATTAAAAAAAAATAATTACGCCGT
AGACACAGCTTATGATGGAGAAACCGGCCAGGCCATGGCTGAAACCGGAATATACGATATAATTATTCTTGATCGCATGT
TGCCTTGCAAAGAAGGAGTTGAAATATTAAAGGAACTCCGCAATCAGGGGATTGGTACACCCGTTCTCATGTTAACGGCA
AAGGATGCGGTAGAGAACAGGATCGAAGGGCTTGATGCCGGGGCAGATGATTACCTGATCAAGCCTTTTTCCACCGGGGA
ATTACTGGCCCGGGTTAGGGCCCTGGCAAGAAGAAGGAACGTACAGCTTGGCGGGGACAAGCTAGAGGCCTGGGGATTAA
TTCTTGACCCACAACGTTGTGAAGTAACTAAAGATGGGACCACGATTAAACTTACTTTAAAGGAATCATTACTACTGGAA
CTGTTTATGCGCAATCCCGGTCAGGTAATAACCAGAGAACAAATATTAGATCGGGTCTGGGGGTTAGACTCCGATGTTGA
AACAGGTACTGTGGAAATATATGTCCATTACCTCCGTAAAAAACTAAATTTCCGGGATATTTCAATAGAAACAATTCGAG
GTGTCGGCTATTGCTTAAAGGGGAGGTAA

Protein sequence : 
MRLLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCKEGVEILKELRNQGIGTPVLMLTA
KDAVENRIEGLDAGADDYLIKPFSTGELLARVRALARRRNVQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLE
LFMRNPGQVITREQILDRVWGLDSDVETGTVEIYVHYLRKKLNFRDISIETIRGVGYCLKGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-23 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-22 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-30 47
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-25 46
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-27 44
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0308 Protein 9e-22 43
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 6e-27 42
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0125 Protein 9e-25 42
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0197 Protein 3e-22 42
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0347 Protein 3e-22 42
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-20 42
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 5e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-23 43
Desca_0357 YP_004496165.1 winged helix family two component transcriptional regulator VFG1390 Protein 2e-28 42