Gene Information

Name : Desca_2712 (Desca_2712)
Accession : YP_004498441.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2853561 - 2854040 bp
Length : 480 bp
Strand : -
Note : TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: drm:Dred_3293 hypothetical protein; PFAM: SPOUT methyltransferase, predicted

DNA sequence :
ATGAAGATCACCATATTAGCCGTAGGTAGGCTAAAAGAAAAATACCTGGTGGAAGGGGTTAAAGAATACCTGAAAAGACT
AAACCCCTACGCCAGGGTAGAAATATCAGAGGTACCGGACGAACCCTGCCCCGAAAACGCCCCCCCGGCCATAGAAGAGC
AAGTCAAACAAAAAGAAGCAGACAGATTAATAAAACGCCTGCGTCCAGGTACTTTCCTCATCGTTCTGGACGCCCGGGGG
AAAATGTTCACCTCAGAAGAACTGGCCGGAAAAATAGAGGAACTGGCCCTAACCGGTCGCAGTGATATAACCTTCATTAT
AGGCGGCTCAGTTGGTCTGGCAACGTCTATTGTGGATAGAGCCGATTTGTTGTTGTCTTTGTCTAAACTAACCTTTCCTC
ATCAGATAGTACGACTGGTTTTGCTGGAGCAGGTTTATCGGTGTTTTAGGATAATTAAAAATGAACCCTACCATAAGTAA

Protein sequence :
MKITILAVGRLKEKYLVEGVKEYLKRLNPYARVEISEVPDEPCPENAPPAIEEQVKQKEADRLIKRLRPGTFLIVLDARG
KMFTSEELAGKIEELALTGRSDITFIIGGSVGLATSIVDRADLLLSLSKLTFPHQIVRLVLLEQVYRCFRIIKNEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-40 54
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-40 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-40 51
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-40 51
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 51
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-40 51
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 51
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-40 51
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-40 51
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-40 51
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-39 51
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-40 51
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-40 51
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-40 51
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-40 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-36 50
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-40 50
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-40 50