Gene Information

Name : Desca_2384 (Desca_2384)
Accession : YP_004498131.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2505843 - 2506541 bp
Length : 699 bp
Strand : -
Note : KEGG: drm:Dred_0630 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduc

DNA sequence : 
ATGAACGGAACCATATTAATTGCCGATGATGATCATAGGATTGTAAAAATTGTAACTCATTGCCTGGAACAGGAGGGATA
CCGGGTTGTGGCTGCCCAGGACGGTGAAGAAGCTGTCAGGATGGCCGGTGCCCTGAAGCCTGACCTGGTAATACTGGATA
TTATGATGCCTAAACTGGATGGGTTGGAGGCCTGTCAAAAAATTAAAGGGGCTGCTGATGTACCTATTGTCATATTGTCC
GCTAAGGACGATCTGGTGGATAAAATTGTGGGCTTTAAAATGGGTGTAGATGACTACCAAACCAAACCCTTTAGTCCAGC
TGAATTAGCTTTAAGGGTAAAAGCCGTTTTAAGACGCAGCAAAGGTGTCACTGATCGCAAAAAAGGCCAGGAAATATTAA
ATTACCCCCATGTATATATTGAACTTGCCACCCGCCAGGTGCGTATTTGGGAACAAGAAATAAGTCTGACGGCTAAAGAA
TTTGATTTACTCTGGTTAATGGCATCCCATCCTAATCAAGTATTTTCTCGCTTACAATTACTGGAACAAATTTGGGAAAG
CCGATACGAAGGCGATGAGGATACAGTAACGGTACATATCAGAAGGTTAAGAAGAAAAATCGAGCGGAATCCGGCCCAAC
CGGAGCTAATAAAAACGGTTTGGGGAGTAGGTTATAAGTTTGAGGCTCCTAAACAGTGA

Protein sequence : 
MNGTILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLDGLEACQKIKGAADVPIVILS
AKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKGVTDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKE
FDLLWLMASHPNQVFSRLQLLEQIWESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFEAPKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-39 46
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 2e-46 45
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator FJ349556.1.orf0.gene Protein 2e-47 45
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 8e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 8e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 4e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 6e-44 42
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_014475.1.orf0.gen Protein 2e-38 41
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator NC_005054.2598277.p0 Protein 2e-38 41
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 3e-39 41
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 5e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator VFG1563 Protein 1e-39 41
Desca_2384 YP_004498131.1 winged helix family two component transcriptional regulator VFG1389 Protein 2e-32 41