Gene Information

Name : Desca_2243 (Desca_2243)
Accession : YP_004497993.1
Strain : Desulfotomaculum carboxydivorans CO-1-SRB
Genome accession: NC_015565
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2356629 - 2357303 bp
Length : 675 bp
Strand : -
Note : KEGG: drm:Dred_0759 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduc

DNA sequence :
ATGGGCGCCAGAATTTTGGTTATTGATGATGATCCTAAAATTACCGCCATGCTGCAGCGGGTATTAACCTATGAGGGCTA
CCGGGTGGAGGTAGCCAACGATGGTTATACCGGTCTAAAGATGGCCCAAAAAAACCCGCCTGAATTGCTTATTCTGGATA
TTATGATGCCCGGATTGGACGGCTGGGAAATCTGCCGGCGCTTCCGCCGGGAAAATTTTATTCCCATTTTAATACTGAGT
GCCCGGGATGAGGTGGAGAGCCGGGTTAAGGGTCTTAATTTGGGGGCCGATGACTACTTAGTCAAGCCCTTTGCTTTGGA
GGAATTGTTGGCCCGGGTGCAGGCCCTTTTACGTCGTAAAACTAATTCCGCCAAAGTAATTCAGTTTGCTGACTTGAAAA
TGGACTTATCGACCAGGGAAGTACACCGGGCCGGGGTGCTGTTGTCCCTAACTTCCAAGGAATTTGATTTACTGCAGCTG
TTTTTACAACACCCTAATCAAGTATTGACCAAAGATACGATTATAGATCACATTTGGGGTATAGACTACACAGGAGGTTC
CAATGTACTGGAGGTTTATGTGAATATGCTGCGCCAGAAGTTGGAGGAGGGCAACCGGTCCAGGCTGATCCATACGGTAC
GGGGAGTGGGTTATGTCTTAAGGGAGCAGGGATAA

Protein sequence :
MGARILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLDGWEICRRFRRENFIPILILS
ARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTNSAKVIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQL
FLQHPNQVLTKDTIIDHIWGIDYTGGSNVLEVYVNMLRQKLEEGNRSRLIHTVRGVGYVLREQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-41 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0638 Protein 1e-41 48
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0083 Protein 6e-48 46
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0111 Protein 7e-48 46
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-42 45
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0308 Protein 4e-45 45
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-48 45
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator BAC0125 Protein 4e-47 43
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 4e-37 43
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator CP001485.1.gene721.p Protein 5e-33 42
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 5e-39 42
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 9e-43 41
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 9e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator VFG1390 Protein 1e-55 52
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-42 46
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator VFG1386 Protein 1e-46 45
Desca_2243 YP_004497993.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-41 43